RetrogeneDB ID: | retro_amel_1142 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192952.1:240476..240795(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSAMEG00000006087 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 62.28 % |
Parental protein coverage: | 95.73 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGA-KEKNLKVKGPVRMPT-KTLRITTRKTPCGEG |
T...PVEPEV..H...IT.T...VKSLEKVC.DL.RGA.KEKNLKVK..VRMPT...LRIT.RKT.CG.. | |
Retrocopy | TLERPVEPEVVGH*VGITITISDVKSLEKVCTDLTRGA<KEKNLKVKELVRMPT<RGLRITVRKT-CGKA |
Parental | SKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIETGVEVEVTIA |
SKTW..FQM.I....IDL..PS..VK.IT...IE.GVE.EV..A | |
Retrocopy | SKTWQHFQMKI----IDLYNPSKTVKRITPVGIELGVEMEVITA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |