RetrogeneDB ID: | retro_cpor_544 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_19:11647515..11647863(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSCPOG00000011697 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.02 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG |
AFKDT.K...E.EV.I....IT..SRNVK.LEK..ADLIR.AKEK.LKV.GP..M.TKT.RITT.KTPCG | |
Retrocopy | AFKDTRKISAEAEVVI--C*ITFNSRNVKFLEKSHADLIRSAKEKYLKVRGPTHMHTKTSRITTSKTPCG |
Parental | EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA |
E.SKT.D.F.M.IH..LIDLH...E...QI.S.S..PGVE......DA | |
Retrocopy | ECSKT*DHFHMKIHR*LIDLHNVYETDEQIISNSTDPGVEAKIIDTDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .94 RPM |
SRP017611_liver | 0 .00 RPM | 92 .19 RPM |
SRP040447_lung | 0 .00 RPM | 174 .78 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 186 .40 RPM |