RetrogeneDB ID: | retro_cpor_1064 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_42:11434916..11435179(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSCPOG00000011697 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.53 % |
Parental protein coverage: | 73.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TGKTPVEPEVAIHRIRITLTSRNV-KSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGS |
T.KTPVEPEVAIHRIR.TLT..N...S..KVCADL.RGAKEKNLKVKGPVRMP.KTLR.TTRK.PCGEGS | |
Retrocopy | TAKTPVEPEVAIHRIRVTLTNCNL<ESVKKVCADLGRGAKEKNLKVKGPVRMPAKTLRLTTRKMPCGEGS |
Parental | KTWDRFQMRIHKRLIDLHS |
K.W..FQ.RIHK.L.DL.S | |
Retrocopy | KAWHLFQVRIHK*LTDLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .94 RPM |
SRP017611_liver | 0 .00 RPM | 92 .19 RPM |
SRP040447_lung | 0 .00 RPM | 174 .78 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 186 .40 RPM |