RetrogeneDB ID: | retro_amel_1409 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193336.1:395550..395890(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSAMEG00000006087 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 57.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNL-KVKGPVRMPTKTLRIT-TRKTP |
AFKD..KT...PEV.IHRIRITLTS...K.......DL..GA......K.KG.V.MPTKTLRIT.T.KTP | |
Retrocopy | AFKDIRKT---PEVVIHRIRITLTSHD-KIFGEGMSDLPSGAQRRRISKEKGQVWMPTKTLRIT<TGKTP |
Parental | CG-EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIETGVEVEVTIAD |
.G..G.KT.D.F..R.H..LID.H..S.IVKQI.S.SIE.GVEVE....D | |
Retrocopy | WG<QGTKTQDCFLIRTHEWLIDCHHASKIVKQIVSHSIESGVEVEIIFVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |