RetrogeneDB ID: | retro_amel_336 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192390.1:2576253..2576923(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSAMEG00000009753 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 61.57 % |
Parental protein coverage: | 65.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | TKTRVGIRRGKIGQELKEAAMEPSVEKIFKIDQMGRWVIAGGAAVGLGALCYYGLGMSNEIGAIEKAVIW |
T..R.GI..GK.GQE.KEA..EPS.EK..............G...GLGAL.YYGLG..NEI..IEKAVIW | |
Retrocopy | THQRTGIWCGKAGQEPKEAVLEPSIEKYLNLIR*EDGLLLDGL-LGLGALFYYGLGIYNEIVTIEKAVIW |
Parental | PQYVKDRIHSTYMYLAGSIGLTALSALAVSRTPILMNFMMRGSWVTIGATFAAM-IGAGMMVQSIPYDQS |
P.YVK.R.HS...YLAGSIG.TALS.L.V.RT..LMN.M.RGSWV..GATF.A..IG.GM.VQSI.YDQS | |
Retrocopy | PRYVKNRNHSMHIYLAGSIGFTALSTLEVNRT-LLMN-MIRGSWVRTGATFEAI<IGGGMLVQSILYDQS |
Parental | P-GPKHLAWLLHSGVMGAVVAPLT-ILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLG |
P..PK.LA.L..S.V.G...APLT.....PLLIRAA.YT.G...G.ST.A.CA.S.KFLNMG..LGVGLG | |
Retrocopy | P>DPKELA*LFYSSVKGPIMAPLT>XXXXPLLIRAA*YTVGLGRGPSTLATCALSGKFLNMGPSLGVGLG |
Parental | LVFVSSLGSMFLPPTTVAG |
L....SLGSMFLPPTT..G | |
Retrocopy | LILIPSLGSMFLPPTTHCG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy |
retro_amel_336 ,
|
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |