RetrogeneDB ID: | retro_dnov_2426 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_73993:8263..9064(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSDNOG00000018880 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 74.09 % |
Parental protein coverage: | 77.71 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 6 |
Parental | DQM-GRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKD-RIHSTYMYLAGSIGLTALSALAM |
DQM.GRWFVAGGAAVGL.ALCY.GLG.SNEIG.IEKA.IWPQY.KD.RI.ST.MYLAGSIGLTALS.L.M | |
Retrocopy | DQM<GRWFVAGGAAVGLRALCYCGLGLSNEIGNIEKATIWPQYLKD<RIQSTCMYLAGSIGLTALSTLTM |
Parental | TRSPALMGFMMRGSWVTIGATFAAMIGAGMLVRSIPYDQSPGPKHLA-WLLHSGVMGAVVAPLAILGGPL |
.RS..LM.FMMRGSWV.IGAT.A..IGAGMLV.S..YD.SP.PKHL...LLHSGVM.AV.APL.IL.GP. | |
Retrocopy | IRSHVLMSFMMRGSWVMIGATIAGSIGAGMLVQSLSYDRSPSPKHLT<*LLHSGVMVAVIAPLEILRGPH |
Parental | LIRAAWYTAGIVGGLSTVAMCAPSEKFMNMGAPLGVGLGLVFVSSLGSMFLPPTTVA-GATLYSVAVYGG |
LI.A.WYTAGIVGGLST..MC.P..KF.NMGAP.GVGLG.VFV.SLGS.FLP.T.VA.G.TLYSVAVY.G | |
Retrocopy | LIKAVWYTAGIVGGLSTKVMCLPG-KFINMGAPWGVGLGFVFVPSLGSIFLPTTSVA>GTTLYSVAVYSG |
Parental | LVLFSMFLLYDTQKVIWRAEGAPLYGVQKYDPIN--TGIYIDALNLFM-VAAML-ATG-SNRKK |
LVLFSMFL.YDTQKVI..AE.A.LYG.Q.Y..IN...GIY.D.LN.FM.V...L.ATG.SNRKK | |
Retrocopy | LVLFSMFL*YDTQKVIRQAEVALLYGGQ*YNLIN*MMGIYVDTLNIFM*VVTVL>ATG>SNRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 148 .18 RPM |
SRP012922_cerebellum | 0 .00 RPM | 145 .30 RPM |
SRP012922_heart | 0 .00 RPM | 71 .23 RPM |
SRP012922_kidney | 0 .00 RPM | 130 .87 RPM |
SRP012922_liver | 0 .00 RPM | 73 .38 RPM |
SRP012922_lung | 0 .00 RPM | 61 .85 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 97 .79 RPM |
SRP012922_spleen | 0 .00 RPM | 59 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |