Parental gene: | GHITM, ENSDNOG00000018880 |
| Aliases: | None |
| Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_5248:69917..79631(+) |
>ENSDNOG00000018880
CTGGCGGCAAGGTTTGTGTGTCTCCGGACACTGCCTTCCAGAGTTTTCCACCCAGCTCTCACCAAGGCCTCCCCTGGTCT
GAAGAACTCCATCACAAAGAATCAATGGCTCTTAACACCTCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCAGATGGGA
AGATGGTTTGTTGCTGGAGGAGCTGCTGTCGGTCTTGGAGCATTGTGCTACTATGGCCTGGGAATGTCTAATGAGATTGG
AGCCATTGAGAAGGCTGTAATTTGGCCTCAGTACGTGAAGGACAGAATTCATTCCACTTACATGTACTTAGCAGGAAGCA
TTGGTTTAACAGCTTTGTCTGCCTTGGCAATGACCAGGTCTCCTGCTCTTATGGGCTTCATGATGAGAGGCTCTTGGGTG
ACGATTGGGGCCACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTGCGGTCCATCCCCTACGACCAGAGCCCCGGCCC
GAAGCACCTGGCCTGGCTGCTGCATTCCGGTGTCATGGGTGCCGTGGTGGCCCCCCTGGCCATCTTGGGGGGCCCTCTCC
TCATCAGAGCTGCTTGGTACACAGCCGGCATTGTGGGCGGCCTCTCCACCGTGGCCATGTGTGCGCCCAGCGAGAAGTTC
ATGAACATGGGCGCCCCCCTGGGCGTGGGCCTGGGCCTCGTCTTCGTATCCTCGCTGGGGTCTATGTTTCTTCCGCCTAC
CACAGTGGCGGGCGCCACGCTGTACTCGGTGGCCGTCTATGGCGGGTTGGTTCTTTTCAGCATGTTTCTGCTCTACGACA
CCCAGAAAGTGATCTGGCGAGCCGAAGGGGCACCGCTGTACGGAGTTCAGAAGTACGACCCCATCAACACGGGAATCTAT
ATAGATGCATTAAATTTATTTATGGTTGCCGCTATGCTAGCAACTGGAAGCAACAGAAAGAAATGA
CTGGCGGCAAGGTTTGTGTGTCTCCGGACACTGCCTTCCAGAGTTTTCCACCCAGCTCTCACCAAGGCCTCCCCTGGTCT
GAAGAACTCCATCACAAAGAATCAATGGCTCTTAACACCTCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGATCAGATGGGA
AGATGGTTTGTTGCTGGAGGAGCTGCTGTCGGTCTTGGAGCATTGTGCTACTATGGCCTGGGAATGTCTAATGAGATTGG
AGCCATTGAGAAGGCTGTAATTTGGCCTCAGTACGTGAAGGACAGAATTCATTCCACTTACATGTACTTAGCAGGAAGCA
TTGGTTTAACAGCTTTGTCTGCCTTGGCAATGACCAGGTCTCCTGCTCTTATGGGCTTCATGATGAGAGGCTCTTGGGTG
ACGATTGGGGCCACCTTTGCAGCCATGATTGGAGCAGGCATGCTGGTGCGGTCCATCCCCTACGACCAGAGCCCCGGCCC
GAAGCACCTGGCCTGGCTGCTGCATTCCGGTGTCATGGGTGCCGTGGTGGCCCCCCTGGCCATCTTGGGGGGCCCTCTCC
TCATCAGAGCTGCTTGGTACACAGCCGGCATTGTGGGCGGCCTCTCCACCGTGGCCATGTGTGCGCCCAGCGAGAAGTTC
ATGAACATGGGCGCCCCCCTGGGCGTGGGCCTGGGCCTCGTCTTCGTATCCTCGCTGGGGTCTATGTTTCTTCCGCCTAC
CACAGTGGCGGGCGCCACGCTGTACTCGGTGGCCGTCTATGGCGGGTTGGTTCTTTTCAGCATGTTTCTGCTCTACGACA
CCCAGAAAGTGATCTGGCGAGCCGAAGGGGCACCGCTGTACGGAGTTCAGAAGTACGACCCCATCAACACGGGAATCTAT
ATAGATGCATTAAATTTATTTATGGTTGCCGCTATGCTAGCAACTGGAAGCAACAGAAAGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 148 .18 RPM |
| SRP012922_cerebellum | 145 .30 RPM |
| SRP012922_heart | 71 .23 RPM |
| SRP012922_kidney | 130 .87 RPM |
| SRP012922_liver | 73 .38 RPM |
| SRP012922_lung | 61 .85 RPM |
| SRP012922_quadricep_muscle | 97 .79 RPM |
| SRP012922_spleen | 59 .86 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009753 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000032829 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001576 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006432 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000001109 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000001796 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000009646 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000009861 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000011621 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000001693 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000006093 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012120 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000013961 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000010345 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000016365 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000006367 | ortholog_one2many | 1 retrogene | |
| Drosophila melanogaster | FBgn0030263 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_708 | 68.03 | 70.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_812 | 72.22 | 77.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_2426 | 74.09 | 77.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_2514 | 69.05 | 59.24 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_2524 | 86.62 | 77.71 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000018880 retrocopies