RetrogeneDB ID: | retro_ocun_260 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018720:350670..351708(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000001672 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006093 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKKQWLITPSREYATKTRIGARRGKTGQDLKEAALEPS |
MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKKQWLITPSREYATKTRIGARRGKTGQDLKEAALEPS | |
Retrocopy | MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKKQWLITPSREYATKTRIGARRGKTGQDLKEAALEPS |
Parental | VEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTAL |
VEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTAL | |
Retrocopy | VEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTAL |
Parental | SAMAVTRTPVLMNFMMKGSWVTIGATFAAMIGAGMLVQSISYEQSPGPKHLAWLLHSGVMGAVVAPLTIL |
SAMAVTRTPVLMNFMMKGSWVTIGATFAAMIGAGMLVQSISYEQSPGPKHLAWLLHSGVMGAVVAPLTIL | |
Retrocopy | SAMAVTRTPVLMNFMMKGSWVTIGATFAAMIGAGMLVQSISYEQSPGPKHLAWLLHSGVMGAVVAPLTIL |
Parental | GGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSVGSMFLPPTSVAGATLYSVAV |
GGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSVGSMFLPPTSVAGATLYSVAV | |
Retrocopy | GGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSVGSMFLPPTSVAGATLYSVAV |
Parental | YGGLVLFSMFLLYDTQKVIKRAEIAPMYGIQKYDPINSMLGIYMDTLNIFMRVATMLATGSNRKK |
YGGLVLFSMFLLYDTQKVIKRAEIAPMYGIQKYDPINSMLGIYMDTLNIFMRVATMLATGSNRKK | |
Retrocopy | YGGLVLFSMFLLYDTQKVIKRAEIAPMYGIQKYDPINSMLGIYMDTLNIFMRVATMLATGSNRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .94 RPM | 42 .00 RPM |
SRP017611_kidney | 9 .53 RPM | 46 .02 RPM |
SRP017611_liver | 4 .08 RPM | 13 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy |
retro_ocun_260 ,
|
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |