Parental gene:

GHITM, ENSSSCG00000010345

Aliases:None
Description:growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281]
Organism:Pig (Sus scrofa)
Coordinates:14:92190362..92207964(+)


>ENSSSCG00000010345
ATGCTAGCGGCAAGACTCGTGTGTCTCCGGACTCTACCCTCCAGAGTTTTCCATCCAACTTTCACCAAGGCCTCCCCTGT
TGTGAAGAATTCCATCACAAAGAATCAATGGCTTTTAACACCCAGCAGGGAATATGCTACCAAGACAAGAATTGGGATCC
GCCGTGGGAAAACTGGCCAAGAACTCAAGGAGGCAGCTTTGGAACCATCAGTGGAAAAAATATTTAAAATTGATCAGATG
GGAAGATGGTTTATTGCTGGAGGGGCTGCTGTTGGTCTTGGAGCGCTGTGCTACTATGGCTTGGGAATGTCTAATGAGAT
TGGAGCTATTGAAAAGGCCATAATTTGGCCTCAGTATGTGAAAGATAGAATTCATTCAACTTATATGTACTTAGCAGGAA
GTATTGGTTTAACAGCTATGTCTGCTCTGGCAGTGAGCAGAACTCCTGCTCTCATGAACTTCATGATGAAAGGCTCTTGG
GTGACAATTGGTGCAACCTTTGCAGCCATGATTGGAGCTGGAATGCTGGTACAATCAATATCATATGACCGGAGCCCAGG
CCCAAAGCATCTTGCTTGGTTACTACATTCTGGTGTGATGGGTGCGGTGGTGGCTCCTTTGACGATATTAGGGGGGCCTC
TTCTCATCAGGGCTGCATGGTACACAGCTGGCATCGTAGGAGGCCTCTCCACTGTGGCCATGTGTGCGCCCAGTGAGAAG
TTTCTGAACATGGGAGCACCCCTGGGCGTGGGCCTGGGTCTCGTCTTTGTATCCTCACTGGGATCTATGTTTCTTCCACC
TACCACTGTGGCTGGTGCCACTCTATACTCAGTGGCAATTTACGGTGGATTAGTTCTTTTCAGCATGTTTCTTCTGTATG
ATACACAGAAAGTAATCAAACGTGCAGAAGTAGTACCAATGTATGGAGTTCAAAAATATGATCCCATCAATTCGATGCTG
GGAATCTACATGGATACATTAAACATATTTATGCGAGTTGCCAGTATTCTAGCAACTGGAGGCAACAGAAAGAAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 69 .29 RPM
SRP014902_testis 61 .67 RPM
SRP018856_adipose 148 .21 RPM
SRP018288_kidney 490 .36 RPM
SRP018288_lung 43 .28 RPM
SRP018288_liver 258 .57 RPM
SRP018288_heart 255 .13 RPM
SRP035408_liver 156 .08 RPM
SRP035408_brain 137 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009753 ortholog_one2one 1 retrogene
retro_amel_336,
Bos taurus ENSBTAG00000032829 ortholog_one2one 2 retrogenes
retro_btau_1689, retro_btau_779,
Choloepus hoffmanni ENSCHOG00000001576 ortholog_one2many 1 retrogene
retro_chof_5,
Cavia porcellus ENSCPOG00000006432 ortholog_one2one 1 retrogene
retro_cpor_1436,
Dasypus novemcinctus ENSDNOG00000018880 ortholog_one2one 5 retrogenes
retro_dnov_2426, retro_dnov_2514, retro_dnov_2524, retro_dnov_708, retro_dnov_812,
Dipodomys ordii ENSDORG00000001109 ortholog_one2one 1 retrogene
retro_dord_184,
Echinops telfairi ENSETEG00000001796 ortholog_one2many 1 retrogene
retro_etel_68,
Loxodonta africana ENSLAFG00000009646 ortholog_one2one 1 retrogene
retro_lafr_388,
Macropus eugenii ENSMEUG00000009861 ortholog_one2one 3 retrogenes
retro_meug_1431, retro_meug_1806, retro_meug_798,
Microcebus murinus ENSMICG00000011621 ortholog_one2one 1 retrogene
retro_mmur_692,
Monodelphis domestica ENSMODG00000001693 ortholog_one2one 3 retrogenes
retro_mdom_1008, retro_mdom_407, retro_mdom_886,
Oryctolagus cuniculus ENSOCUG00000006093 ortholog_one2many 1 retrogene
retro_ocun_260,
Otolemur garnettii ENSOGAG00000012120 ortholog_one2one 1 retrogene
retro_ogar_1287,
Rattus norvegicus ENSRNOG00000013961 ortholog_one2one 1 retrogene
retro_rnor_2461,
Tupaia belangeri ENSTBEG00000016365 ortholog_one2one 2 retrogenes
retro_tbel_1601, retro_tbel_2819,
Tarsius syrichta ENSTSYG00000006367 ortholog_one2many 1 retrogene
retro_tsyr_4,
Drosophila melanogaster FBgn0030263 ortholog_one2many 1 retrogene
retro_dmel_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1102 65.73 60.87
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Download FASTA sequences of all ENSSSCG00000010345 retrocopies