RetrogeneDB ID: | retro_meug_1431 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold40157:3344..4249(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000010847 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSMEUG00000009861 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 87.13 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GYATKSRIGVRRGKTGQELKEAAFEPSAERIFKIDQMGRWFVAGGAAVGLGALCFYGLGMSNEIGAIEKA |
GYATKSRIGVR.GK..QE.KE.AFEPSAERIFKIDQMG.WFVAGGAAVGLGALCF.GLGMSNEIGA.EKA | |
Retrocopy | GYATKSRIGVRCGKIDQEIKEVAFEPSAERIFKIDQMGKWFVAGGAAVGLGALCFHGLGMSNEIGAVEKA |
Parental | VI-WPQYVKDRIHATYMYFAGSVGLTALSALAVSRSPALMTFMMKGSWLXXXXXXXXXXXXXMLVRSISY |
VI.WPQYVKD.IHATY.YFAGSVGLTALSALAVSRSPALMTFMMK.SWL.............MLVRSISY | |
Retrocopy | VI<WPQYVKDGIHATYIYFAGSVGLTALSALAVSRSPALMTFMMKDSWLTIGETFVAMIGAGMLVRSISY |
Parental | ERSPGLKHLAWMFHSGVMGTVVAPLTLLGGPLILKAFWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGL |
E.SPGLKHL.WMFHSGVMGTVVAPLTLL..PLILKAFWYTAGIVGGLSTVAMCAPSEKFLNMGA.LGVGL | |
Retrocopy | EWSPGLKHLPWMFHSGVMGTVVAPLTLLDDPLILKAFWYTAGIVGGLSTVAMCAPSEKFLNMGALLGVGL |
Parental | GVVFVSSLGSMFLPPTTALGAGLYSVAMYGGLVLFSMFLLYDTQKVIKRAEIMPMYGTERYDPINSMMGI |
GVVFVSS.GSMFLP.TTALGAGLYSVAMYGGLVLFSMFLLYDT.KVIK.AEI..M.GTERYDPINSMMGI | |
Retrocopy | GVVFVSSWGSMFLPSTTALGAGLYSVAMYGGLVLFSMFLLYDTPKVIKHAEIISM*GTERYDPINSMMGI |
Parental | YMDTLNIFMRVATMLATGSNRKK |
YMDTLN.FM.VATMLATGSNRKK | |
Retrocopy | YMDTLNMFM*VATMLATGSNRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies |
retro_meug_1431 , retro_meug_1806, retro_meug_798,
|
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |