RetrogeneDB ID: | retro_dnov_708 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_100354:5678..6392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSDNOG00000018880 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 68.03 % |
Parental protein coverage: | 70.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSALAMTR |
D..GR.FVAGGAAVGLG.LC.YGLGMS...GA.EKA.IWP.YVK.RI.ST.MYLAG.....ALSALA..R | |
Retrocopy | DETGRGFVAGGAAVGLGTLCCYGLGMSKDSGALEKAAIWPHYVKERIQSTRMYLAGRTDSIALSALAGSR |
Parental | SPA-LMGFMMRGSWVTIGATFAAMIGAGMLVRSIPYDQSPGPKHLAWLLHSG-VMGAVVAPLAILGGPLL |
.P..LM..MMRGSWV...ATF...I.A.MLV..I.YDQSPGPKHLAWLL.SG.VMGAVVAPL.I.GG... | |
Retrocopy | TPI<LMN-MMRGSWVIVNATFVDLIRAEMLVQLISYDQSPGPKHLAWLLLSG<VMGAVVAPLTIVGGTPF |
Parental | IRAAWYTAGIVGGLSTVAMCAPSEKFMNMGAPLGV-GLGLVFVSSLGSMFLPPTTVAGATLYSVAVYGGL |
IRAAWYT.GIVGGLST.A..APSEK..NMG.PL...G.G.V.V..L....LP.TTVAGATLY.VAVYG.L | |
Retrocopy | IRAAWYTDGIVGGLSTAARHAPSEKVVNMGTPLRM<GRGRVSVH-LWDLVLPSTTVAGATLY*VAVYG*L |
Parental | VLFSMFLLYDTQKVIWRAEGAPLYGVQKYDPINT |
VL.S.F.LY.TQKVI..AE.A.L.G.QKYD.IN. | |
Retrocopy | VLYSLFFLYNTQKVIGLAEIALLRGSQKYDLINS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 148 .18 RPM |
SRP012922_cerebellum | 0 .00 RPM | 145 .30 RPM |
SRP012922_heart | 0 .00 RPM | 71 .23 RPM |
SRP012922_kidney | 0 .27 RPM | 130 .87 RPM |
SRP012922_liver | 0 .00 RPM | 73 .38 RPM |
SRP012922_lung | 0 .00 RPM | 61 .85 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 97 .79 RPM |
SRP012922_spleen | 0 .00 RPM | 59 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |