RetrogeneDB ID: | retro_tbel_2819 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_120025:76213..77200(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSTBEG00000016365 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 80.65 % |
Parental protein coverage: | 97.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 7 |
Parental | LPSRVLHPSFTKASPVLKNSI-RKSQWLLTPSREYATKTRVGTRRGRTGQELKEAALEPSMEKIFKIDQM |
LP....HPS.....P.L...I..KSQ.LLT.SREYATKTRVGTR.G.TGQEL.EAALEPSM.KIFKIDQM | |
Retrocopy | LPGYSTHPS---SRPPLPSRI>HKSQRLLTSSREYATKTRVGTRCGKTGQELIEAALEPSMKKIFKIDQM |
Parental | GRWFVAGGAAVGLGALCYYGLGMA-NEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSALAISRTP |
GRWF.A.GAA.GLG.LCYYGLGMA..EIGAIE.AV.WPQYVKDRIHSTYMYLAGSIGLTALSALAISRTP | |
Retrocopy | GRWFFARGAADGLGTLCYYGLGMA<YEIGAIE*AVTWPQYVKDRIHSTYMYLAGSIGLTALSALAISRTP |
Parental | VLM-NFMLRGSWVTIGATFAAMIGAGMLVRSLPYDQS-PGPKHLAWLLHSGVMGAVVAPLTILGGPLLIR |
VLM..FMLRGSWVTIGATF.AMIGA.MLVRSLPYDQS.PG.KHLAWLLHSG.M.AVVAPLTILGGPLLIR | |
Retrocopy | VLM<DFMLRGSWVTIGATFTAMIGARMLVRSLPYDQS<PGSKHLAWLLHSGMMAAVVAPLTILGGPLLIR |
Parental | AAW-YTAGIVGGLSTVAMCAPSEKFLNMGA-PLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLV |
....YTAGIVGGLS.VAMCAPS..FLN.G..P.G.G.GL.FVSSL.SMFLPPTTVAGA.LYSVAM.GGLV | |
Retrocopy | GRC<YTAGIVGGLSMVAMCAPSK*FLNRGT<PPGMGWGLTFVSSLRSMFLPPTTVAGAILYSVAMSGGLV |
Parental | LFSMFLLYDTQKVI-KRAEVIPAYGVQKYDPINSMLGIYMDTLNIFMRVATMLATGSNRKK |
LF.MFLLY.T.KVI.KRAEVIPAY.VQKY.PI..MLGI.MDTLNIFMR.AT.LATGS.RKK | |
Retrocopy | LFNMFLLYNTPKVI>KRAEVIPAYSVQKY-PISLMLGISMDTLNIFMRFATRLATGSDRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies |
retro_tbel_1601, retro_tbel_2819 ,
|
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |