RetrogeneDB ID: | retro_tsyr_4 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_229023:1181..2231(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000003575 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000006367 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.56 % |
Parental protein coverage: | 99.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LAARLVCLRTLPSRVFHPTFTKASPFVKNSIVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQELKEAA |
LAARLVCL.TLPSRVFHPTFTKASP.VKNS.VKNSITKNQWLLTPSREYATKTRIGIR.GKTGQELKEAA | |
Retrocopy | LAARLVCLWTLPSRVFHPTFTKASPVVKNSVVKNSITKNQWLLTPSREYATKTRIGIRCGKTGQELKEAA |
Parental | LEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLGGSIG |
LEP.MEKIFKIDQMGRWFVAG.A.VGLGALCYYGLGMSNEIG.IEKAVIWPQYVKDRIHSTY.YLGGSIG | |
Retrocopy | LEPLMEKIFKIDQMGRWFVAGWASVGLGALCYYGLGMSNEIGTIEKAVIWPQYVKDRIHSTYIYLGGSIG |
Parental | LTALSALAISRTPVLMNFMMRGSWVTIGATFAAMIGAGMLVQSISYDRSPGPKHLAWLLHSGVMGAVVAP |
LTAL.ALAISRTPVLMNFMMRGSWV.IGATFAAMIGAGMLVQS.SYDRSPGPKHLAWLLHSG.MGAVVAP | |
Retrocopy | LTALPALAISRTPVLMNFMMRGSWVKIGATFAAMIGAGMLVQSVSYDRSPGPKHLAWLLHSGAMGAVVAP |
Parental | LTIIGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLY |
LTIIGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGL.FVS.LGSMFLPPTTVAGATLY | |
Retrocopy | LTIIGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLIFVSLLGSMFLPPTTVAGATLY |
Parental | SVAMYGGLVLFSMFLLYDTQKVIKRAEIAPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLATGGNRKK |
SVAMYGGLVLFSMFLLY.TQ.VIKRAEIAPMYGVQKYDPINSMLSIYMDTLNIFMRV.TMLATG.NRKK | |
Retrocopy | SVAMYGGLVLFSMFLLYGTQEVIKRAEIAPMYGVQKYDPINSMLSIYMDTLNIFMRVVTMLATGSNRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy |
retro_tsyr_4 ,
|
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |