RetrogeneDB ID: | retro_tbel_1601 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5194:25032..25943(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSTBEG00000016365 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 90.49 % |
Parental protein coverage: | 88.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VLHPSFTKASPVLKNSIRKSQWLLTPSREYATKTRVGTRRGRTGQELKEAALEPSMEKIFKIDQMGRWFV |
V.HPSFTKASPVLKNSIRKSQWLL.PSREYATKTRVGT..GRTGQEL.EAALE..MEKIFKIDQMGR.FV | |
Retrocopy | VFHPSFTKASPVLKNSIRKSQWLLIPSREYATKTRVGTQHGRTGQELEEAALETLMEKIFKIDQMGR*FV |
Parental | AGGAAVGLGALCYYGLGMANEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSALAISRTPVLM-NF |
AGGAAVGLGALCYYGLGMANEI.AI.KAV.W..YVKDRIHSTYMYLAGSIGLTALSALAISRTPVLM..F | |
Retrocopy | AGGAAVGLGALCYYGLGMANEIAAIGKAVFWLRYVKDRIHSTYMYLAGSIGLTALSALAISRTPVLM<DF |
Parental | MLRGSWVTIGATFAAMIGAGMLVRSLPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAG |
MLRGSWVTIGA.FAAMIGAGMLV.SLP.DQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLI.AA.YTAG | |
Retrocopy | MLRGSWVTIGAIFAAMIGAGMLVQSLPCDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLI*AALYTAG |
Parental | IVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLFSMFLLYD |
I.GGLSTVAMCAPSEKFLN.G.PLGVGLGL.FVSSLGSMFLP.TTVAGATLYSVAMY.GLVLFS.FLLYD | |
Retrocopy | IMGGLSTVAMCAPSEKFLNVGSPLGVGLGLIFVSSLGSMFLPTTTVAGATLYSVAMYRGLVLFSTFLLYD |
Parental | TQKVIKRAEVIPAYGVQKYDPINSM |
TQKVIK.AEVIPAYGVQKYDPINS. | |
Retrocopy | TQKVIKLAEVIPAYGVQKYDPINSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies |
retro_tbel_1601 , retro_tbel_2819,
|
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |