Parental gene:

GHITM, ENSCPOG00000006432

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_62:7586861..7597035(-)


>ENSCPOG00000006432
ATGCTGGCTGCAAGGCTCGTGTGTCTGCGGACACTACCCTCTAGGGTTTTCCACCCAGCATTCACCAAGGCCACCTCCCC
CACCGTGAAGAATTCCACCAAGAAGCATCAATGGCTCTTAACACCCAGCAGGGAATATGCCACCAGGTCAAGATTTGGAA
TCCGCCGGGGAAAAACTGCCCAAGAACTCAAAGAGGCAGCGATGGAACCATCAGTAGAAAAAGCATATAAAATTGAACAG
CTAGGAAAATGCTTCCTTGCCGGAGGGGCTGCCGTGGGTCTTGGAGCGTTGTGCTACTACGGCTTGGGCATGTCGAATGA
GATAGGGGCCATTGAAAAGGCTGTAGTCTGGCCTCAGTATGTGAAGGACAGGATCCACTCCACCTACATGTACTTGGCAG
GCAGTGTGGGCTTCACAGCTCTGTCTGCCTTGGCAGTAGCCAGAAGCCCTGTTCTCATGAACTTCATGATGAGAGGCTCG
TTGGTGACAGTCGGTGCAACTTTTGTAGCCATGATTGGAGCTGGAATGCTGGTGCAGTCCATACCCTACGAGCAGCAGCC
AGGCCCGAAGCATCTCGCCTGGTTGCTCCATTCCGGTGTGATGGGAGCGGTGGTGGCGCCTCTAACCATCCTGGGCGGCC
CCCTCCTTGTCAGAGCGGCGTGGTACACGGCCGGCATCGTGGGCGGCCTGTCCACCGTGGCCATGTGCGCGCCCAGTGAG
AAGTTCCTGAACATGGGCGCGCCCCTGGGCGTGGGCCTGGGCCTCGTCTTCGCCGCCTCGCTGGGCTCGATGTTCATCCC
GCCCACCACCGTGGCCGGCTCCGCTCTGTACACGGTGGCCGTGTACGGCGGGCTAGCGCTATTCAGCATGTTCCTTCTGC
ACGACACTCAGAAAGTCATCAAGCGCGCGGAGATCACGCCGGTGTACGGAGCCCAGAAGTTCGACCCCATCAATTCGATG
CTGGCGATCTACATGGATGTGTTAAACATATTCATGCGAGTGGCCACCATGCTGGCAGCGGGCGGCAACAGGAAGAAGTG
A

Library Parental gene expression (RPM)
SRP017611_brain 66 .89 RPM
SRP017611_kidney 286 .01 RPM
SRP017611_liver 135 .41 RPM
SRP040447_lung 84 .49 RPM
SRP040447_skeletal_muscle 169 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009753 ortholog_one2one 1 retrogene
retro_amel_336,
Bos taurus ENSBTAG00000032829 ortholog_one2one 2 retrogenes
retro_btau_1689, retro_btau_779,
Choloepus hoffmanni ENSCHOG00000001576 ortholog_one2many 1 retrogene
retro_chof_5,
Dasypus novemcinctus ENSDNOG00000018880 ortholog_one2one 5 retrogenes
retro_dnov_2426, retro_dnov_2514, retro_dnov_2524, retro_dnov_708, retro_dnov_812,
Dipodomys ordii ENSDORG00000001109 ortholog_one2one 1 retrogene
retro_dord_184,
Echinops telfairi ENSETEG00000001796 ortholog_one2many 1 retrogene
retro_etel_68,
Loxodonta africana ENSLAFG00000009646 ortholog_one2one 1 retrogene
retro_lafr_388,
Macropus eugenii ENSMEUG00000009861 ortholog_one2one 3 retrogenes
retro_meug_1431, retro_meug_1806, retro_meug_798,
Microcebus murinus ENSMICG00000011621 ortholog_one2one 1 retrogene
retro_mmur_692,
Monodelphis domestica ENSMODG00000001693 ortholog_one2one 3 retrogenes
retro_mdom_1008, retro_mdom_407, retro_mdom_886,
Oryctolagus cuniculus ENSOCUG00000006093 ortholog_one2many 1 retrogene
retro_ocun_260,
Otolemur garnettii ENSOGAG00000012120 ortholog_one2one 1 retrogene
retro_ogar_1287,
Rattus norvegicus ENSRNOG00000013961 ortholog_one2one 1 retrogene
retro_rnor_2461,
Sus scrofa ENSSSCG00000010345 ortholog_one2one 1 retrogene
retro_sscr_1102,
Tupaia belangeri ENSTBEG00000016365 ortholog_one2one 2 retrogenes
retro_tbel_1601, retro_tbel_2819,
Tarsius syrichta ENSTSYG00000006367 ortholog_one2many 1 retrogene
retro_tsyr_4,
Drosophila melanogaster FBgn0030263 ortholog_one2many 1 retrogene
retro_dmel_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1436 58.50 87.57
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Download FASTA sequences of all ENSCPOG00000006432 retrocopies