RetrogeneDB ID:

retro_meug_1806

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold60276:6..657(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GHITM
Ensembl ID:ENSMEUG00000009861
Aliases:None
Description:growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281]


Retrocopy-Parental alignment summary:






>retro_meug_1806
TATATGTATTTCATATGGAGTGTTGGTTTAACAGCATTGTCTGCCTTAGCAGTTAGCCAATCACCTGCTTTAATGACCTT
TATGACGAAAGGCTCTTGACTGACAATTGGAGCAACTTTTGTAGCCAGGATTGAAGTCAGAATGCTGAATCAGTCACCAT
CATATGAATAGAGCCCAGGCCTAAAACATTTTGCTTGGATGTTCCATTCTGATGTCATGGGTACAGTGGTGGCCCCTCTG
ACTTTGTTGGGTGGCCCTCTGATCCTCTAATCTCTCTGGTATACAGCAGGTATTGTGGGTGGACTCTCTACTGTAGCCAT
GTGTGCTCCAGGTGAAACATCTCTAAACATGGGAGCCACACTGGGAGTGGACCTGGGTTGCTTTTTTTCTTCTTTGAGAT
CTATGTTTCTACCGCCTACCACTGCACTTGGTGCTAGTCTTTGTTTTGTGGAAATGTATGGTGGATTAGTTCTTTTTAGC
ATGTTCCTTCTATATGATACCCCAAAAGTCATTAAGCTTGCAGAAATAGTGCCCATGTATGGCACAGAAAGATATGACCC
CATTAACTCCATTATGAGAATGTACATGGACACACTAAATATCTTCTTGCAAGTAGCCACCATGCTAGCAACTGGGAGCA
ACAGGAAGAAA

ORF - retro_meug_1806 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.98 %
Parental protein coverage: 72.19 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalYMYFAGSVGLTALSALAVSRSPALMTFMMKGSWLXXXXXXXXXXXXXMLVRSISYERSPGLKHLAWMFHS
YMYF..SVGLTALSALAVS.SPALMTFM.KGS.L.............ML..S.SYE.SPGLKH.AWMFHS
RetrocopyYMYFIWSVGLTALSALAVSQSPALMTFMTKGS*LTIGATFVARIEVRMLNQSPSYE*SPGLKHFAWMFHS
ParentalGVMGTVVAPLTLLGGPLILKAFWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGVVFVSSLGSMFLPP
.VMGTVVAPLTLLGGPLIL...WYTAGIVGGLSTVAMCAP.E..LNMGA.LGV.LG..F.SSL.SMFLPP
RetrocopyDVMGTVVAPLTLLGGPLIL*SLWYTAGIVGGLSTVAMCAPGETSLNMGATLGVDLG-CFFSSLRSMFLPP
ParentalTTALGAGLYSVAMYGGLVLFSMFLLYDTQKVIKRAEIMPMYGTERYDPINSMMGIYMDTLNIFMRVATML
TTALGA.L..V.MYGGLVLFSMFLLYDT.KVIK.AEI.PMYGTERYDPINS.M..YMDTLNIF..VATML
RetrocopyTTALGASLCFVEMYGGLVLFSMFLLYDTPKVIKLAEIVPMYGTERYDPINSIMRMYMDTLNIFLQVATML
ParentalATGSNRKK
ATGSNRKK
RetrocopyATGSNRKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1806 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1806 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 28 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000097531 retrocopy
Bos taurus ENSBTAG000000328292 retrocopies
Choloepus hoffmanni ENSCHOG000000015761 retrocopy
Cavia porcellus ENSCPOG000000064321 retrocopy
Dasypus novemcinctus ENSDNOG000000188805 retrocopies
Dipodomys ordii ENSDORG000000011091 retrocopy
Echinops telfairi ENSETEG000000017961 retrocopy
Loxodonta africana ENSLAFG000000096461 retrocopy
Macropus eugenii ENSMEUG00000009861 3 retrocopies
retro_meug_1431, retro_meug_1806 , retro_meug_798,
Microcebus murinus ENSMICG000000116211 retrocopy
Monodelphis domestica ENSMODG000000016933 retrocopies
Oryctolagus cuniculus ENSOCUG000000060931 retrocopy
Otolemur garnettii ENSOGAG000000121201 retrocopy
Rattus norvegicus ENSRNOG000000139611 retrocopy
Sus scrofa ENSSSCG000000103451 retrocopy
Tupaia belangeri ENSTBEG000000163652 retrocopies
Tarsius syrichta ENSTSYG000000063671 retrocopy
Drosophila melanogaster FBgn00302631 retrocopy



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