RetrogeneDB ID: | retro_meug_1806 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold60276:6..657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GHITM | ||
Ensembl ID: | ENSMEUG00000009861 | ||
Aliases: | None | ||
Description: | growth hormone inducible transmembrane protein [Source:HGNC Symbol;Acc:17281] |
Percent Identity: | 77.98 % |
Parental protein coverage: | 72.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | YMYFAGSVGLTALSALAVSRSPALMTFMMKGSWLXXXXXXXXXXXXXMLVRSISYERSPGLKHLAWMFHS |
YMYF..SVGLTALSALAVS.SPALMTFM.KGS.L.............ML..S.SYE.SPGLKH.AWMFHS | |
Retrocopy | YMYFIWSVGLTALSALAVSQSPALMTFMTKGS*LTIGATFVARIEVRMLNQSPSYE*SPGLKHFAWMFHS |
Parental | GVMGTVVAPLTLLGGPLILKAFWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGVVFVSSLGSMFLPP |
.VMGTVVAPLTLLGGPLIL...WYTAGIVGGLSTVAMCAP.E..LNMGA.LGV.LG..F.SSL.SMFLPP | |
Retrocopy | DVMGTVVAPLTLLGGPLIL*SLWYTAGIVGGLSTVAMCAPGETSLNMGATLGVDLG-CFFSSLRSMFLPP |
Parental | TTALGAGLYSVAMYGGLVLFSMFLLYDTQKVIKRAEIMPMYGTERYDPINSMMGIYMDTLNIFMRVATML |
TTALGA.L..V.MYGGLVLFSMFLLYDT.KVIK.AEI.PMYGTERYDPINS.M..YMDTLNIF..VATML | |
Retrocopy | TTALGASLCFVEMYGGLVLFSMFLLYDTPKVIKLAEIVPMYGTERYDPINSIMRMYMDTLNIFLQVATML |
Parental | ATGSNRKK |
ATGSNRKK | |
Retrocopy | ATGSNRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009753 | 1 retrocopy | |
Bos taurus | ENSBTAG00000032829 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001576 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006432 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018880 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000001109 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001796 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009646 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009861 | 3 retrocopies |
retro_meug_1431, retro_meug_1806 , retro_meug_798,
|
Microcebus murinus | ENSMICG00000011621 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001693 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006093 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012120 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013961 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010345 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016365 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000006367 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030263 | 1 retrocopy |