RetrogeneDB ID: | retro_btau_1198 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 29:31113683..31114595(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000047210 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15ORF29 | ||
Ensembl ID: | ENSBTAG00000006413 | ||
Aliases: | KATNBL1, C10H15orf29 | ||
Description: | None |
Percent Identity: | 98.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASETHNVKKRNFCNHTEDHSIDLPRKRISNFTNKNMKEVKKSPKQLATYITRTVGQAVKSPDKLRKVIY |
MASETHNVKKRNFCNHTEDHSIDLPRKRISNFTNKNMKEVKKSPKQLATYITRTVGQAVKSP.KLRKVIY | |
Retrocopy | MASETHNVKKRNFCNHTEDHSIDLPRKRISNFTNKNMKEVKKSPKQLATYITRTVGQAVKSPGKLRKVIY |
Parental | RRKKVHHPIQNPCYRKKQSPKSGGCVMANKENELACAGHLPEKLRHDSRTYLINTSDSGSSQTESPSSKY |
RRKKVHHPIQNPCYRKKQSPKSGGCVMANKENELACAGHLPEKLR.DSRTYLINTSDS.SSQTESPSSKY | |
Retrocopy | RRKKVHHPIQNPCYRKKQSPKSGGCVMANKENELACAGHLPEKLRPDSRTYLINTSDSSSSQTESPSSKY |
Parental | SGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQY |
SGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQY | |
Retrocopy | SGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQY |
Parental | ISLGCCVDLLPLVKSLLKSRFEEYIIVGLNWLQAVIKRWWSELSSKTEIMNDGNIQILKQQLSGLWEQEN |
ISLGCC.DLLPLVKSLLKSRFEEYIIVGLNWLQAVIKRWWSELSSKTEIMNDGNIQILKQQLSGLWEQEN | |
Retrocopy | ISLGCCIDLLPLVKSLLKSRFEEYIIVGLNWLQAVIKRWWSELSSKTEIMNDGNIQILKQQLSGLWEQEN |
Parental | HLTLVPGYTGNIAKDVDAYLLQLH |
HLTLVPGYTGNIAKDVDAYLLQLH | |
Retrocopy | HLTLVPGYTGNIAKDVDAYLLQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .29 RPM | 2 .74 RPM |
ERP005899_muscle | 0 .16 RPM | 4 .75 RPM |
SRP017611_brain | 0 .05 RPM | 2 .92 RPM |
SRP017611_kidney | 0 .12 RPM | 4 .98 RPM |
SRP017611_liver | 0 .00 RPM | 1 .13 RPM |
SRP030211_testis | 0 .24 RPM | 3 .91 RPM |