Parental gene:

C15ORF29, ENSCPOG00000011153

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_10:18917901..18928579(+)


>ENSCPOG00000011153
ATGGCATCTGAAAACCACAATGTTAAAAAACGGAACTTTTGTAATAATATTGAGGATCATTCCATTGATCTTCCCAGAAA
AAGGATTTCTAATTTCACTAATAAGAACATGAAGGAGGTTAAGAGATCTCCAAAACAGTTGGCTGCTTACATAAACAGAA
CAGTTGGACAAGCTGTGAAAAGCCCAGGTATACTACACAAAGTGATCAATCGCAGAAAGAAAGTTCATCATCCCTTTCCA
AATCCTTGTTACAGAAAAAAAGAGTCCCCTAGAAGTGGGGGCTGTGACATGGCAAATAAAGAAAATGAACTGGCTTGTGC
AGGCCACCTCCCTGAAAAATTACACCATGATAGTCGAACATATGTGGTTAACTCTAGTGACTCTAGTTCTTCACAGACAG
AAAGCCCGTCATCAAAATATAGTGGTTTTTTCTCTGAGGTTTCTCAGGACCATGAAACAATGGCCCAAGTTTTGTTCAGC
AGGAATTTGAGATTGAATGTAGCTTTAACTTTCTGGAGAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGGTGAGAAT
AGAAGACCTTGGAGTTGTGGTAGATTGCCTTCCTGTGCTCACCAATAGTTTACAGGAAGAAAAACAGTATATCTCACTTG
GCTGCTGTGTAGATTTATTGCCTCTAGTAAAGTCGTTACTTAAAAGCAAATTTGAAGAATATGTAATAGTTGGTTTAAAT
TGGCTTCAAGCAGTAATAAAAAGGTGGTGGTCAGAGCTCTCATCCAAAACAGAAATTATAAATGATACAAATATCCAGAT
TTTAAAACAACAATTAAGTAGATTATGGGAGCAGGCAAACCATCTTACTTTGGTTCCAGGATATACTGGTAACATAGCTA
AGGATGTAGATGCTTATTTATTGCAGTTGCAT

Library Parental gene expression (RPM)
SRP017611_brain 4 .72 RPM
SRP017611_kidney 7 .22 RPM
SRP017611_liver 2 .05 RPM
SRP040447_lung 5 .93 RPM
SRP040447_skeletal_muscle 1 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006413 ortholog_one2one 2 retrogenes
retro_btau_1198, retro_btau_1776,
Callithrix jacchus ENSCJAG00000021110 ortholog_one2many 3 retrogenes
retro_cjac_1971, retro_cjac_265, retro_cjac_2971,
Dasypus novemcinctus ENSDNOG00000016279 ortholog_one2one 5 retrogenes
retro_dnov_1586, retro_dnov_2201, retro_dnov_2253, retro_dnov_248, retro_dnov_957,
Dipodomys ordii ENSDORG00000013172 ortholog_one2one 2 retrogenes
retro_dord_378, retro_dord_730,
Equus caballus ENSECAG00000023450 ortholog_one2one 1 retrogene
retro_ecab_841,
Echinops telfairi ENSETEG00000001640 ortholog_one2one 7 retrogenes
retro_etel_1169, retro_etel_1341, retro_etel_2032, retro_etel_2062, retro_etel_319, retro_etel_518, retro_etel_635,
Homo sapiens ENSG00000134152 ortholog_one2one 3 retrogenes
retro_hsap_3171, retro_hsap_3677, retro_hsap_425,
Gorilla gorilla ENSGGOG00000014230 ortholog_one2one 3 retrogenes
retro_ggor_1347, retro_ggor_2486, retro_ggor_415,
Macropus eugenii ENSMEUG00000015610 ortholog_one2one 4 retrogenes
retro_meug_1035, retro_meug_1899, retro_meug_1900, retro_meug_646,
Myotis lucifugus ENSMLUG00000001532 ortholog_one2many 2 retrogenes
retro_mluc_214, retro_mluc_633,
Macaca mulatta ENSMMUG00000000013 ortholog_one2one 1 retrogene
retro_mmul_2005,
Mustela putorius furo ENSMPUG00000008019 ortholog_one2one 1 retrogene
retro_mputfur_1258,
Nomascus leucogenys ENSNLEG00000010772 ortholog_one2one 2 retrogenes
retro_nleu_1020, retro_nleu_2679,
Oryctolagus cuniculus ENSOCUG00000017654 ortholog_one2one 5 retrogenes
retro_ocun_1065, retro_ocun_343, retro_ocun_614, retro_ocun_877, retro_ocun_975,
Otolemur garnettii ENSOGAG00000015633 ortholog_one2one 3 retrogenes
retro_ogar_1643, retro_ogar_2219, retro_ogar_3301,
Ochotona princeps ENSOPRG00000010379 ortholog_one2one 1 retrogene
retro_opri_446,
Pongo abelii ENSPPYG00000006309 ortholog_one2one 2 retrogenes
retro_pabe_2634, retro_pabe_646,
Pan troglodytes ENSPTRG00000006877 ortholog_one2one 3 retrogenes
retro_ptro_2271, retro_ptro_2491, retro_ptro_323,
Sorex araneus ENSSARG00000007891 ortholog_one2one 1 retrogene
retro_sara_345,
Ictidomys tridecemlineatus ENSSTOG00000003813 ortholog_one2one 1 retrogene
retro_itri_1292,
Tupaia belangeri ENSTBEG00000001614 ortholog_one2one 7 retrogenes
retro_tbel_1267, retro_tbel_127, retro_tbel_1362, retro_tbel_2139, retro_tbel_3276, retro_tbel_4552, retro_tbel_984,
Tarsius syrichta ENSTSYG00000011059 ortholog_one2one 1 retrogene
retro_tsyr_2135,
Vicugna pacos ENSVPAG00000007170 ortholog_one2one 1 retrogene
retro_vpac_632,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1374 72.78 57.89
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2. retro_cpor_1410 73.76 71.71
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Download FASTA sequences of all ENSCPOG00000011153 retrocopies