RetrogeneDB ID: | retro_cpor_1410 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:57740046..57740701(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15ORF29 | ||
Ensembl ID: | ENSCPOG00000011153 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.76 % |
Parental protein coverage: | 71.71 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | KESPRSGGCDMANKEN-ELACAGHLPEKLHHDSRTYVVNSSDSSSSQTESPSSKYSGFFSEVSQDHETMA |
K..P..G..D.ANKEN.ELACAG.LPEK.H.DS.TYVVN..DS.SSQ.ES..S...G.FS..S.D.ET.A | |
Retrocopy | KTDP*RGD*DKANKEN>ELACAGQLPEKSHRDSWTYVVNFHDSGSSQRESLLSEHTGLFSDISHDSETVA |
Parental | QVLFSRNLRLNVALTF-WRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQYISLGCCVDLLPLVK |
Q.LFSRNLR.NVALTF..RKR..SELVAYLVR.ED.GVVVDCLPV.TNS..EEK.YISL.CCVDLL.LVK | |
Retrocopy | QGLFSRNLRSNVALTF<LRKRRVSELVAYLVRVEDFGVVVDCLPVPTNSS*EEKHYISLSCCVDLLLLVK |
Parental | SL-LKSKFEEYVIVGLNWLQAVIKRWWSELSSKTEIINDTNIQILKQQLSRLWEQANHLTLVPGYTGNIA |
SL.LKSKFEEYVIVGLNWLQAVIKR..SELS.KT.IIND.N..ILKQQLSRL.EQ.NHL.LVPGY.GNI. | |
Retrocopy | SL>LKSKFEEYVIVGLNWLQAVIKR**SELSLKTGIINDRNTHILKQQLSRLREQENHLSLVPGYIGNIT |
Parental | KDVDAYLLQLH |
.DV...LLQLH | |
Retrocopy | EDVGVDLLQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 4 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .22 RPM |
SRP017611_liver | 0 .04 RPM | 2 .05 RPM |
SRP040447_lung | 0 .03 RPM | 5 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .95 RPM |