RetrogeneDB ID: | retro_hsap_3171 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:51227230..51227870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249270 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSG00000134152 | ||
Aliases: | KATNBL1, C15orf29 | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 69.44 % |
Parental protein coverage: | 70.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QSPGSG-GCDMANKENELACAGHLPEKLHHDSRTYLVNSSDSGSSQTESPSSKYSGFFSEVSQDHETMAQ |
QSP.SG.GCD.ANKENEL.CAGHLPEKL......YL.N.SDS..SQ..SPSS.YS..FS.VSQDHET... | |
Retrocopy | QSPRSG<GCDVANKENELVCAGHLPEKLCQSRQIYLLNPSDSNFSQI*SPSSQYSQYFSQVSQDHETNGP |
Parental | VLFSRNMRLNVALTFWRK-RSISELVAYLLRIEDLGVVVDCLPVLTNCLQEEKQYISLGCCVDLLPLVKS |
..............F..K.RSI.E..A.L.RIEDLG..VDCLPVLT..LQ.EKQYI.L...V..LPLV.S | |
Retrocopy | SFAQQEFETECIFNFLEK<RSIREFAACLVRIEDLGIEVDCLPVLTSSLQGEKQYILLERWVGSLPLVNS |
Parental | LLKSKFEEYVIVGLNWLQAVIKRWWSELSSKTEIINDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAKD |
L.KSKFE.Y..VGLNWLQAVIKRWWSEL.SKTEIIN.GNIQILKQQL.GL.EQENHLTLVPGYTGNIAK. | |
Retrocopy | LCKSKFEKYLTVGLNWLQAVIKRWWSELLSKTEIINNGNIQILKQQLNGLLEQENHLTLVPGYTGNIAKE |
Parental | VDAYLL |
VDAYLL | |
Retrocopy | VDAYLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 16 .26 RPM |
bodymap2_adrenal | 0 .00 RPM | 23 .87 RPM |
bodymap2_brain | 0 .00 RPM | 23 .42 RPM |
bodymap2_breast | 0 .00 RPM | 27 .92 RPM |
bodymap2_colon | 0 .00 RPM | 19 .86 RPM |
bodymap2_heart | 0 .00 RPM | 13 .20 RPM |
bodymap2_kidney | 0 .00 RPM | 29 .04 RPM |
bodymap2_liver | 0 .00 RPM | 9 .23 RPM |
bodymap2_lung | 0 .00 RPM | 25 .49 RPM |
bodymap2_lymph_node | 0 .00 RPM | 36 .46 RPM |
bodymap2_ovary | 0 .00 RPM | 28 .68 RPM |
bodymap2_prostate | 0 .07 RPM | 28 .98 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .80 RPM |
bodymap2_testis | 0 .00 RPM | 27 .15 RPM |
bodymap2_thyroid | 0 .00 RPM | 17 .95 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1347 |
Pongo abelii | retro_pabe_2634 |
Macaca mulatta | retro_mmul_2005 |
Callithrix jacchus | retro_cjac_1971 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |