RetrogeneDB ID: | retro_dord_378 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_149023:5..441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Katnbl1 | ||
Ensembl ID: | ENSDORG00000013172 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B like 1 [Source:MGI Symbol;Acc:MGI:1919675] |
Percent Identity: | 81.88 % |
Parental protein coverage: | 55.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YLVNSSEAGSSQTESPASKFSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDL |
YLVNS.EAGSSQTESP.SKFS.F.SEV.QDHE.MAQ.LFSRNLR.N.AL.FWRKRSIS.L.AYLVRI.DL | |
Retrocopy | YLVNSREAGSSQTESPSSKFSEFCSEVLQDHEKMAQLLFSRNLRSNRALMFWRKRSISKLIAYLVRI-DL |
Parental | GVVVDCLPVLTNSLQEE-KQYVSLGCCVDLLPLVKSLLKSKFEEYVIVGLNWLQAVIKRWWSELSSKTDV |
G...D.LPVLTNSLQEE.KQYVSLGCCVDLLPLVKSLLKSKFEEY.IVGLNWLQAVIK.WW..LS.KT.V | |
Retrocopy | GGAADYLPVLTNSLQEE<KQYVSLGCCVDLLPLVKSLLKSKFEEYTIVGLNWLQAVIKTWWL*LSAKTEV |
Parental | -INDGNIKI |
.INDGNI.. | |
Retrocopy | <INDGNIRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |