RetrogeneDB ID: | retro_mmul_2005 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:49496938..49497584(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSMMUG00000000013 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 69.09 % |
Parental protein coverage: | 71.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | QSPGSGG-CDMANKENELACASHLPEKLHHDSRTYLVNSSDSGSSQTESPSSKYSGFFSEVSQDHET-MA |
QSP.SG..CDMAN.ENEL.CA.HLPEKL...S..YL.N.SDS..SQT.SPSS.YS..FS.VSQDHET.MA | |
Retrocopy | QSPRSGA<CDMANRENELVCANHLPEKLYQSSQIYLLNPSDSDFSQT*SPSSQYSQYFSQVSQDHET>MA |
Parental | QVLFSRNMR-LNVALTFWRK-RSISELVAYLLRIEDLGVVVDCLPVLTNCLQEEKQYISLGCCVDLLPLV |
QVL.SRN.........F..K.RSI.E....L.RIEDLG.VVDCLPVLT..L..EKQYI.L...V..LPLV | |
Retrocopy | QVLLSRNLK<IECSFNFLEK<RSICEFASCLVRIEDLGIVVDCLPVLTSSL*GEKQYILLEGWVVSLPLV |
Parental | KSLLKSKFEEYVIVGLNWLQAVIKRWWSELSSKTEIISDGNIKILKQQLSGLWEQENHLTLVPGYTGNIA |
.SL.KSKFE.Y...GLNWLQAVIKRWWSEL.SK.EII..GNI..LKQQL.GLWEQENHLTLVPGYTGNIA | |
Retrocopy | NSLCKSKFEKYLTFGLNWLQAVIKRWWSELLSKREIINNGNIQVLKQQLNGLWEQENHLTLVPGYTGNIA |
Parental | KDVDAYLLQL |
K..DAYLL.. | |
Retrocopy | KEADAYLLSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .85 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .15 RPM |
SRP007412_heart | 0 .00 RPM | 4 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .63 RPM |
SRP007412_liver | 0 .00 RPM | 2 .18 RPM |
SRP007412_testis | 0 .00 RPM | 4 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3171 |
Gorilla gorilla | retro_ggor_1347 |
Pongo abelii | retro_pabe_2634 |
Callithrix jacchus | retro_cjac_1971 |