RetrogeneDB ID: | retro_pabe_646 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10_random:31814072..31814740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSPPYG00000006309 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 74.78 % |
Parental protein coverage: | 73.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | NFCNKIEDHFIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQTVKSPDKLRKVIYRRKKVHHPFPN |
NFCN.IEDHFIDL......N.TNKNMKEVKKSPKQL.AYINRTVG..VKSPDKL.KVIY.RKKV.HPFPN | |
Retrocopy | NFCNNIEDHFIDLSXXXXDNLTNKNMKEVKKSPKQLSAYINRTVGEAVKSPDKLCKVIYERKKVYHPFPN |
Parental | PCYR-KKQSPGSGGCDMANKENELACAGHLPEKLHHDSRTYLVNSSDSGSSQTE-SPSSKYSGFFSEVSQ |
.CYR.K.QS..SG.CDMAN.ENE.ACAGHLPEK..H..RTYL.NSSDSGSSQTE.SPSSK.S..FSE.S. | |
Retrocopy | LCYR>KQQSHRSGLCDMANEENEMACAGHLPEKRRHNGRTYLINSSDSGSSQTE<SPSSKQSEYFSEFSL |
Parental | DHETMAQVLFSRNMRLNVALTFWRKRSISELVAYLLRIEDLGVVVDCLPVLTNCLQ-EEKQYISLGCCVD |
D.ETMAQVLF.RN...NV...F.R.R...E.VAYLLRIE.LG.VVDCLPV.TN.LQ.EEKQ.ISL.CCVD | |
Retrocopy | DLETMAQVLFKRNLIWNVSSIFCRTRHVRERVAYLLRIEGLGIVVDCLPVPTNSLQ<EEKQCISLCCCVD |
Parental | LLPLVKSLLKSKFEEY |
LLPLVK..L.SKFEEY | |
Retrocopy | LLPLVKLILTSKFEEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .37 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .40 RPM |
SRP007412_heart | 0 .00 RPM | 2 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 4 .61 RPM |
SRP007412_liver | 0 .00 RPM | 3 .70 RPM |