RetrogeneDB ID: | retro_cpor_1374 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_76:622146..622670(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15ORF29 | ||
Ensembl ID: | ENSCPOG00000011153 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.78 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RTVGQAVKSPGILHKVINR-RKKVHHPFPNPCYRKKES-PR-SGGCDMANKENELACAGHLPEKLHHDSR |
RTVGQAVK.P.ILHK.....RKKVH.PF..PC.RK..S.PR..GGCDMANK...LAC.GHLPE.L..DS. | |
Retrocopy | RTVGQAVKIPDILHKEMYS<RKKVHLPFASPCHRKNQS<PR<KGGCDMANKDDGLACIGHLPEELLPDSQ |
Parental | TYVVNSSDSSSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIED |
T.VVNSS.SSSS.T.SPSSKY.GFFSEVS.DHE..AQV.FSRNL.LN.ALTF.RKRS..ELV..LVRIED | |
Retrocopy | TNVVNSSHSSSSRTVSPSSKYPGFFSEVSRDHESTAQVWFSRNLGLNIALTFRRKRSVRELVDCLVRIED |
Parental | LGVVVDC-LPVLTNSLQEEKQYISLGCCVDLLPLVKSLLK |
LG.V.D..LP.LTNSLQEEKQYISLG.CVD..PLVKSLL. | |
Retrocopy | LGAVLDS<LPALTNSLQEEKQYISLG*CVDVFPLVKSLLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .22 RPM |
SRP017611_liver | 0 .00 RPM | 2 .05 RPM |
SRP040447_lung | 0 .00 RPM | 5 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .95 RPM |