RetrogeneDB ID: | retro_dnov_2253 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_58869:45561..46071(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KATNBL1 | ||
Ensembl ID: | ENSDNOG00000016279 | ||
Aliases: | None | ||
Description: | katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199] |
Percent Identity: | 61.24 % |
Parental protein coverage: | 55.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | MASETHNVKKRNFCNNI--EDH-SVDLPRKRISNFTIKNMKEVKKSRKQLAAYINRTVGQAVKSTDKLYK |
MAS.THN.KK.NFCN.I..EDH.S.DLPRKRIS.FT.KN.KE.KK..KQLAAY.N.T.GQAVKS.DK..K | |
Retrocopy | MASKTHNIKKQNFCNSIYIEDH>STDLPRKRISDFTNKNTKETKKLPKQLAAYLNGTAGQAVKSPDKSCK |
Parental | VIYRR-KKVHHPSPNPYYRRKQSPRSGGCDMANKENEVACASHLPEKLRHDS-RTYLVNSSDSGSSQTES |
..Y.R.K..H.P.P....RRKQS.RSGG.DMAN...E..CA..........S.R.........GSSQTES | |
Retrocopy | -VYLR<KRLH-PFPDLCCRRKQSSRSGGYDMANNAREMVCAAPVGKITSRES<RHTWLTLREAGSSQTES |
Parental | PSSKYS-GFFSEVSQDHETM-AQVLFSRNLRLN-VALT |
.SSKYS.GF..EVSQ.HE...AQVLFSR.LRLN.VALT | |
Retrocopy | SSSKYS>GFPPEVSQPHEKQ<AQVLFSRILRLN>VALT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .96 RPM |
SRP012922_heart | 0 .00 RPM | 1 .86 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .82 RPM |
SRP012922_liver | 0 .00 RPM | 0 .62 RPM |
SRP012922_lung | 0 .00 RPM | 3 .21 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1 .56 RPM |
SRP012922_spleen | 0 .00 RPM | 4 .58 RPM |