RetrogeneDB ID: | retro_btau_1776 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:119560769..119561675(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C15ORF29 | ||
Ensembl ID: | ENSBTAG00000006413 | ||
Aliases: | KATNBL1, C10H15orf29 | ||
Description: | None |
Percent Identity: | 90.16 % |
Parental protein coverage: | 99.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ASETHNVKKRNFCNHTEDHSIDLPRKRISNFTNKNMKEVKKSPKQLATYITRTVGQAVKSPDKLRKVIYR |
ASETHNVKK.NFCN.TEDHS.DLPRKR.SNFTNKNMKEVKKSPK.LA.YITRTVGQAVK.PDK..KV.YR | |
Retrocopy | ASETHNVKKCNFCNNTEDHSTDLPRKRTSNFTNKNMKEVKKSPK*LAAYITRTVGQAVKNPDKQCKV-YR |
Parental | RKKVHHPIQNPCYRKKQSPKSGGCVMANKENELACAGHLPEKLRHD-SRTYLINTSDSGSSQTESPSSKY |
RKKVHHPIQNPCYRKKQ.PKSGGCVMANKENELACAGHL.EKL.HD..RTYLIN.SDSGSSQTES.SSKY | |
Retrocopy | RKKVHHPIQNPCYRKKQPPKSGGCVMANKENELACAGHLLEKLWHD<CRTYLINSSDSGSSQTESSSSKY |
Parental | SGFFSEVSQDHETMAQVLFSRNLRLNVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQY |
SGFFS.VSQDHETMAQVLFSRNLRLNVALTFWRKRS.SELVAYL.RIEDLGVVVDCLPVLT.SLQEEKQY | |
Retrocopy | SGFFSDVSQDHETMAQVLFSRNLRLNVALTFWRKRSTSELVAYLIRIEDLGVVVDCLPVLTKSLQEEKQY |
Parental | ISLGCCVDLLPLVKSLLKSRFEEYIIV-GLNWLQAVIKRWWSELSSKTEIMNDGNIQILKQQLSGLWEQE |
ISLGCCVD.LPLVK.LLKSRFEEYI...GLN.LQAVIKRWWSELSSKTEI.NDGNIQILKQQLSGLWEQE | |
Retrocopy | ISLGCCVDVLPLVKLLLKSRFEEYITI>GLNGLQAVIKRWWSELSSKTEIVNDGNIQILKQQLSGLWEQE |
Parental | NHLTLVPGYTGNIAKDVDAYLLQLH |
NHLTLVPGYTGNIAKDVDA.LL.LH | |
Retrocopy | NHLTLVPGYTGNIAKDVDA*LLELH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 2 .74 RPM |
ERP005899_muscle | 0 .00 RPM | 4 .75 RPM |
SRP017611_brain | 0 .00 RPM | 2 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .98 RPM |
SRP017611_liver | 0 .00 RPM | 1 .13 RPM |
SRP030211_testis | 0 .00 RPM | 3 .91 RPM |