RetrogeneDB ID:

retro_ogar_3301

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873771.1:326972..327719(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000024203
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:KATNBL1
Ensembl ID:ENSOGAG00000015633
Aliases:None
Description:katanin p80 subunit B-like 1 [Source:HGNC Symbol;Acc:26199]


Retrocopy-Parental alignment summary:






>retro_ogar_3301
GGACAAGCTGTGAAAAATCCAGATAAACTGCATAAGGTGATTTATCACAGAAAGAAAGTTCGTCATTCCTTTCCAAGTCC
TTGTTACAGAAAAAAACAGTCCCCTCAAAGTGGGGGCTGTGACATGGCAAATAAGGAAAATAAACTGGCTTGTGCAGGCC
ACTTGCCTGAAAAATTGCACCATGACAGTCGAACATATTTGATTAACTCCAGTGATTCTAGTTCTTCACAAACAGAAAGC
CCATCATCAAAATACAGTGAGTTTTTTCCTGCGGTTTCTCAGGACCATAAAACAATGGCTCAAGTTTTGTTCAACAGGAA
TTTGAGATTGAATGTAGCTTTAACGTTCTGGAAAAAGAGAAGTATAAGTGAACTTGTAGCTTATTTGATAAGGATAGAAG
ATCTTGGAGTTGTGGTAGATTGCCTTCCTGTGCTCACTAATAGTTTACAGGAAGAAAAACAATATATCTCCCTTGGTTGC
TGTGTAGATTTGTTGCCTCTAGTAAAGTCACTGCTTAAAGGCAAATTTGAAGAATGTGTAATAGTTGGTTTGAACTGGCT
TCAAGCAGTCATAAAAAGATGGTGGTCAGAACTATCATCCAAAACAGAAATTATAAATGATGGAAATATTCAAATTTTAA
AACAACAGTTAAGTGGATTATGGGAAGAAGAAAACCATCTTACTATGGTTCCAGGATATACTGGTAATATAGCTAAGGAT
GTAGATGCTTATTGATTACAGTTGTAT

ORF - retro_ogar_3301 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.18 %
Parental protein coverage: 81.91 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGQAVKNPDKLHKVIYHRKKVRHSFPSPCYRKKQSPQSGGCDMANKENELACAGHLPEKLHHDSRTYLINS
GQAVKNPDKLHKVIYHRKKVRHSFPSPCYRKKQSPQSGGCDMANKEN.LACAGHLPEKLHHDSRTYLINS
RetrocopyGQAVKNPDKLHKVIYHRKKVRHSFPSPCYRKKQSPQSGGCDMANKENKLACAGHLPEKLHHDSRTYLINS
ParentalSDSSSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNLRLNVALTFWKKRSISELVAYLVRIEDLGVVVD
SDSSSSQTESPSSKYS.FF..VSQDH.TMAQVLF.RNLRLNVALTFWKKRSISELVAYL.RIEDLGVVVD
RetrocopySDSSSSQTESPSSKYSEFFPAVSQDHKTMAQVLFNRNLRLNVALTFWKKRSISELVAYLIRIEDLGVVVD
ParentalCLPVLTNSLQEEKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLNWLQAVIKRWWSELSSKTEIINDGNI
CLPVLTNSLQEEKQYISLGCCVDLLPLVKSLLK.KFEE.VIVGLNWLQAVIKRWWSELSSKTEIINDGNI
RetrocopyCLPVLTNSLQEEKQYISLGCCVDLLPLVKSLLKGKFEECVIVGLNWLQAVIKRWWSELSSKTEIINDGNI
ParentalQILKQQLSGLWEQENHLTMVPGYTGNIAKDVDAYLLQLH
QILKQQLSGLWE.ENHLTMVPGYTGNIAKDVDAY.LQL.
RetrocopyQILKQQLSGLWEEENHLTMVPGYTGNIAKDVDAY*LQLY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3301 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 63 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000064132 retrocopies
Callithrix jacchus ENSCJAG000000211103 retrocopies
Cavia porcellus ENSCPOG000000111532 retrocopies
Dasypus novemcinctus ENSDNOG000000162795 retrocopies
Dipodomys ordii ENSDORG000000131722 retrocopies
Equus caballus ENSECAG000000234501 retrocopy
Echinops telfairi ENSETEG000000016407 retrocopies
Homo sapiens ENSG000001341523 retrocopies
Gorilla gorilla ENSGGOG000000142303 retrocopies
Macropus eugenii ENSMEUG000000156104 retrocopies
Myotis lucifugus ENSMLUG000000015322 retrocopies
Macaca mulatta ENSMMUG000000000131 retrocopy
Mustela putorius furoENSMPUG000000080191 retrocopy
Nomascus leucogenys ENSNLEG000000107722 retrocopies
Oryctolagus cuniculus ENSOCUG000000176545 retrocopies
Otolemur garnettii ENSOGAG00000015633 3 retrocopies
retro_ogar_1643, retro_ogar_2219, retro_ogar_3301 ,
Ochotona princeps ENSOPRG000000103791 retrocopy
Pongo abelii ENSPPYG000000063092 retrocopies
Pan troglodytes ENSPTRG000000068773 retrocopies
Sorex araneus ENSSARG000000078911 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000038131 retrocopy
Tupaia belangeri ENSTBEG000000016147 retrocopies
Tarsius syrichta ENSTSYG000000110591 retrocopy
Vicugna pacos ENSVPAG000000071701 retrocopy



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