RetrogeneDB ID: | retro_btau_1602 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 8:31050225..31050615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSBTAG00000004161 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 D2 [Source:UniProtKB/Swiss-Prot;Acc:Q1RMX2] |
Percent Identity: | 86.92 % |
Parental protein coverage: | 88.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT |
MALKRI.KEL.DLA.DPPAQCS.GPVGDDMFHWQATIMG..DSPYQGGVFFLTIHFPTDYPFK.P.VAFT | |
Retrocopy | MALKRINKELSDLAHDPPAQCSVGPVGDDMFHWQATIMGRSDSPYQGGVFFLTIHFPTDYPFKSPQVAFT |
Parental | TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD |
.RIYHPNINSNGSICLD.LRSQWSPAL.ISKVLLSICSLLCDPNPDDP.VP..A.I.KT. | |
Retrocopy | IRIYHPNINSNGSICLDSLRSQWSPALSISKVLLSICSLLCDPNPDDPIVPKMAWICKTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .58 RPM | 55 .73 RPM |
ERP005899_muscle | 0 .32 RPM | 62 .98 RPM |
SRP017611_brain | 0 .14 RPM | 73 .45 RPM |
SRP017611_kidney | 0 .18 RPM | 56 .60 RPM |
SRP017611_liver | 0 .08 RPM | 27 .33 RPM |
SRP030211_testis | 0 .07 RPM | 146 .44 RPM |