RetrogeneDB ID: | retro_btau_1852 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:118988385..118988829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSBTAG00000004161 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 D2 [Source:UniProtKB/Swiss-Prot;Acc:Q1RMX2] |
Percent Identity: | 65.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT |
.ALK.I.KEL...ARDPPAQ.S.GPVGDD.FHW..TIM..N.SPY.G.VF...IHFP.DYPF..PK.AF. | |
Retrocopy | VALKWINKELSEVARDPPAQYSTGPVGDDTFHWETTIMKKNGSPY*GSVFSVPIHFPKDYPFTLPKGAFA |
Parental | T-RIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN-PDDP-LVPEIARIYKTDREKYNRI |
T.RIYHP..N.NGS.....L.S.WS.A..IS.VL.SICSLLC..N.P..P.LVPE.A.IYKTDR..YNRI | |
Retrocopy | T<RIYHPDMNTNGSTRFATLSSLWSLASMISTVLVSICSLLCVSN>PMTPSLVPEVA*IYKTDRDEYNRI |
Parental | AREWTQKYAM |
..EWTQKYAM | |
Retrocopy | FQEWTQKYAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 55 .73 RPM |
ERP005899_muscle | 0 .00 RPM | 62 .98 RPM |
SRP017611_brain | 0 .00 RPM | 73 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 56 .60 RPM |
SRP017611_liver | 0 .00 RPM | 27 .33 RPM |
SRP030211_testis | 0 .00 RPM | 146 .44 RPM |