Parental gene: | UBE2D2, ENSBTAG00000004161 |
| Aliases: | None |
| Description: | Ubiquitin-conjugating enzyme E2 D2 [Source:UniProtKB/Swiss-Prot;Acc:Q1RMX2] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 7:52414546..52457128(+) |
>ENSBTAG00000004161
ATGGCTCTGAAGAGAATCCATAAGGAATTGAATGACCTGGCACGGGACCCCCCAGCACAGTGTTCAGCAGGTCCCGTTGG
AGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAA
TTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTTTTGTCCATCTG
TTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGT
ACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAA
ATGGCTCTGAAGAGAATCCATAAGGAATTGAATGACCTGGCACGGGACCCCCCAGCACAGTGTTCAGCAGGTCCCGTTGG
AGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAA
TTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTTTTGTCCATCTG
TTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGT
ACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 73 .45 RPM |
| SRP017611_kidney | 56 .60 RPM |
| SRP017611_liver | 27 .33 RPM |
| ERP005899_muscle | 62 .98 RPM |
| ERP005899_liver | 55 .73 RPM |
| SRP030211_testis | 146 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000002183 | ortholog_one2one | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000011216 | ortholog_one2one | 6 retrogenes | |
| Bos taurus | ENSBTAG00000003997 | within_species_paralog | 1 retrogene | |
| Bos taurus | ENSBTAG00000020796 | within_species_paralog | 5 retrogenes | |
| Canis familiaris | ENSCAFG00000031041 | ortholog_one2one | 5 retrogenes | |
| Ciona intestinalis | ENSCING00000018711 | ortholog_many2many | 2 retrogenes | |
| Ciona savignyi | ENSCSAVG00000006136 | ortholog_many2many | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000014658 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000001291 | possible_ortholog | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001368 | possible_ortholog | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000006878 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000020666 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000011783 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000009110 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000091896 | ortholog_one2one | 3 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000005415 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000029448 | ortholog_one2one | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000015844 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000017303 | ortholog_one2one | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000015438 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013481 | possible_ortholog | 6 retrogenes | |
| Tupaia belangeri | ENSTBEG00000000270 | possible_ortholog | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005459 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1421 | 88.30 | 63.95 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1602 | 86.92 | 88.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_1739 | 66.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_1775 | 65.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_btau_1851 | 64.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_btau_1852 | 65.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000004161 retrocopies