Parental gene:

BT.38237, ENSBTAG00000003997

Aliases:None
Description:ubiquitin-conjugating enzyme E2 D4 [Source:RefSeq peptide;Acc:NP_001069007]
Organism:Cow (Bos taurus)
Coordinates:22:322995..343683(+)


>ENSBTAG00000003997
ATGGCGCTGAAGAGGATCCAAAAGGAATTAACTGACTTGCAGAGGGACCCCCCTGCCCAGTGCTCTGCAGGACCTGTGGG
AGATGATTTGTTCCACTGGCAAGCTACCATCATGGGCCCGAATGACAGTCCTTACCAAGGAGGCGTTTTCTTCCTGACCA
TCCACTTCCCTACCGATTATCCTTTCAAGCCCCCAAAGGTTGTTTTCACAACCAAAATTTATCATCCCAACATCAACAGC
AATGGCAGCATCTGCCTTGACATCCTGCGGTCCCAGTGGTCTCCAGCACTGACTGTGTCAAAAGTTCTCTTATCCATCTG
TTCTCTGCTCTGCGACCCCAACCCTGATGACCCTCTCGTGCCAGAAATAGCCCATACCTACAAGGCTGATAGAGAGAAGT
ATGTGTCTTCTTTGGATTGCCTTTGGGCCCCAGCTGCTCCAGGTACAACAGACTAG

Library Parental gene expression (RPM)
SRP017611_brain 23 .43 RPM
SRP017611_kidney 20 .03 RPM
SRP017611_liver 15 .03 RPM
ERP005899_muscle 16 .63 RPM
ERP005899_liver 11 .68 RPM
SRP030211_testis 89 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004161 within_species_paralog 6 retrogenes
retro_btau_1421, retro_btau_1602, retro_btau_1739, retro_btau_1775, retro_btau_1851, retro_btau_1852,
Bos taurus ENSBTAG00000020796 within_species_paralog 5 retrogenes
retro_btau_1174, retro_btau_1314, retro_btau_1773, retro_btau_1774, retro_btau_752,
Callithrix jacchus ENSCJAG00000007875 ortholog_one2one 4 retrogenes
retro_cjac_1660, retro_cjac_3666, retro_cjac_3882, retro_cjac_925,
Dipodomys ordii ENSDORG00000006888 ortholog_one2one 5 retrogenes
retro_dord_104, retro_dord_345, retro_dord_408, retro_dord_743, retro_dord_760,
Homo sapiens ENSG00000078967 ortholog_one2one 2 retrogenes
retro_hsap_452, retro_hsap_453,
Gorilla gorilla ENSGGOG00000003378 ortholog_one2one 3 retrogenes
retro_ggor_1843, retro_ggor_2936, retro_ggor_436,
Myotis lucifugus ENSMLUG00000011919 ortholog_one2one 3 retrogenes
retro_mluc_1826, retro_mluc_1827, retro_mluc_594,
Macaca mulatta ENSMMUG00000002410 ortholog_one2one 5 retrogenes
retro_mmul_1067, retro_mmul_1937, retro_mmul_2514, retro_mmul_2515, retro_mmul_531,
Nomascus leucogenys ENSNLEG00000003364 ortholog_one2one 3 retrogenes
retro_nleu_54, retro_nleu_876, retro_nleu_90,
Oryctolagus cuniculus ENSOCUG00000008900 ortholog_one2one 1 retrogene
retro_ocun_1058,
Pongo abelii ENSPPYG00000029727 ortholog_one2one 1 retrogene
retro_pabe_3573,
Sus scrofa ENSSSCG00000016722 ortholog_one2one 2 retrogenes
retro_sscr_671, retro_sscr_79,
Tupaia belangeri ENSTBEG00000003691 ortholog_one2one 9 retrogenes
retro_tbel_1273, retro_tbel_2535, retro_tbel_2782, retro_tbel_307, retro_tbel_367, retro_tbel_37, retro_tbel_4118, retro_tbel_4163, retro_tbel_4312,
Tarsius syrichta ENSTSYG00000000595 ortholog_one2one 14 retrogenes
retro_tsyr_1007, retro_tsyr_1145, retro_tsyr_1162, retro_tsyr_1314, retro_tsyr_1392, retro_tsyr_1415, retro_tsyr_1677, retro_tsyr_1694, retro_tsyr_1859, retro_tsyr_683, retro_tsyr_789, retro_tsyr_836, retro_tsyr_838, retro_tsyr_919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1261 62.62 68.21
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Download FASTA sequences of all ENSBTAG00000003997 retrocopies