RetrogeneDB ID: | retro_btau_1739 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:42307040..42307484(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSBTAG00000004161 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 D2 [Source:UniProtKB/Swiss-Prot;Acc:Q1RMX2] |
Percent Identity: | 66.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MALKRIHKELNDLA-RDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAF |
MAL..I.KEL..L..R.P...CS.GPV..DMFHWQ..IMGP.DSPYQGGVFFL.I.FP..YPFKP.K..F | |
Retrocopy | MALNCICKELLNLCHRYPHSPCSGGPVDNDMFHWQVKIMGPKDSPYQGGVFFLRIQFPSKYPFKPLKIMF |
Parental | TTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAR |
...IYHPNIN.NG.ICLDILRS.W.PALTISKVLL.ICS.LC.PN..DPLVPEI...Y..D..K..RIA. | |
Retrocopy | SA*IYHPNINRNGNICLDILRSEWLPALTISKVLLFICSMLCYPNSGDPLVPEID*LYRKDKWKFDRIAL |
Parental | EWTQKYAM |
E..QKY.M | |
Retrocopy | E*IQKYLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 55 .73 RPM |
ERP005899_muscle | 0 .00 RPM | 62 .98 RPM |
SRP017611_brain | 0 .00 RPM | 73 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 56 .60 RPM |
SRP017611_liver | 0 .00 RPM | 27 .33 RPM |
SRP030211_testis | 5 .17 RPM | 146 .44 RPM |