RetrogeneDB ID: | retro_btau_1261 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 3:23409732..23410046(-) | ||
Located in intron of: | ENSBTAG00000007909 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.38237 | ||
Ensembl ID: | ENSBTAG00000003997 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 D4 [Source:RefSeq peptide;Acc:NP_001069007] |
Percent Identity: | 62.62 % |
Parental protein coverage: | 68.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PNDSPYQGGVFF--LTIHFPTDYPFKPPKVVFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVL-LSI |
PN.S..QG..F...L.I..PTD..FKPPKV.F.T.IYHPNINSN.SIC.DILRSQ..PA.TVS.VL.LSI | |
Retrocopy | PNGSLHQGSIFVCVLKIYIPTDSTFKPPKVAF-TRIYHPNINSNSSICIDILRSQCPPASTVSEVLFLSI |
Parental | CSLLCDPNPDDPLVPEIAHTYKA-DREKYVSSLDCLW |
.S.LC.PNPD...VP..A..YK..DR.KY.S.L..LW | |
Retrocopy | GSMLCLPNPDNSRVPGTAQIYKM<DRDKYKSDLRNLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 11 .68 RPM |
ERP005899_muscle | 0 .11 RPM | 16 .63 RPM |
SRP017611_brain | 0 .00 RPM | 23 .43 RPM |
SRP017611_kidney | 0 .06 RPM | 20 .03 RPM |
SRP017611_liver | 0 .00 RPM | 15 .03 RPM |
SRP030211_testis | 0 .03 RPM | 89 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_859 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003997 | 1 retrocopy |
retro_btau_1261 ,
|
Bos taurus | ENSBTAG00000004161 | 6 retrocopies | |
Bos taurus | ENSBTAG00000020796 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000007875 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006888 | 5 retrocopies | |
Homo sapiens | ENSG00000078967 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003378 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000011919 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003364 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029727 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016722 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003691 | 9 retrocopies | |
Tarsius syrichta | ENSTSYG00000000595 | 14 retrocopies |