RetrogeneDB ID: | retro_btau_914 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 20:6205666..6206217(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000007729 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSBTAG00000019703 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ58] |
Percent Identity: | 67.01 % |
Parental protein coverage: | 59.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MPNIKIFSGSSHQDLSQKIA-DRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEIN-DNLM |
MPNIKIFS.SSHQDLSQK.A...LGL.L.K.VT.KFSNQ.T.VEIGE.VRG.DVYIVQSGCGEI...N.M | |
Retrocopy | MPNIKIFS-SSHQDLSQKTA>PSLGLWLVKAVTVKFSNQ-TYVEIGEKVRGKDVYIVQSGCGEIK<VN*M |
Parental | ELLIMINACK-IASASRVTAVI-PCFP-YARQDKKDKSRAPISAKLVAN-MLSVAGADHIITMDLHASQI |
E.L.M.NACK.IASAS.VTAV..P..P.Y....KKDKS.API.AKLVA..M.SV....H..T.DLHA.Q. | |
Retrocopy | EILVMNNACK>IASASWVTAVS<PVLPTYVWKNKKDKSWAPILAKLVAK<MISVVDKGHSTTRDLHAPQT |
Parental | QGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVD |
...FDIPV.NL.AE.AVLKWIRE..S.WRN....SPDAGGAKR..S..D.LNV. | |
Retrocopy | ---FDIPVENLFAESAVLKWIREKMSKWRNSMTISPDAGGAKRAPSVSDWLNVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .91 RPM |
ERP005899_muscle | 0 .00 RPM | 17 .74 RPM |
SRP017611_brain | 0 .00 RPM | 15 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .44 RPM |
SRP017611_liver | 0 .00 RPM | 5 .44 RPM |
SRP030211_testis | 0 .15 RPM | 27 .94 RPM |