RetrogeneDB ID: | retro_ecab_433 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 18:44418524..44419019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSECAG00000024711 | ||
Aliases: | None | ||
Description: | phosphoribosyl pyrophosphate synthetase 1 [Source:HGNC Symbol;Acc:9462] |
Percent Identity: | 53.25 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRG-EDVYIVQSG-CGEINDNLM |
MPNIKIFS.SS.QD.SQKI...L..ELGKV.T..F.N.E...E.GESV.G.EDVY.VQS......NDNL. | |
Retrocopy | MPNIKIFSCSSYQDSSQKIPYCLVKELGKVFTERFGN*EIVLEVGESVHGQEDVYTVQSN<LRQNNDNLL |
Parental | ELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM-DLHASQIQGF |
.LLIM.NAC.I..A..VT...P.FP.A.Q.KK.KS.AP...KL..NML..A..DH.I.M.D...S.I... | |
Retrocopy | QLLIMGNACNITAANYVTVFVPHFP*AWQNKKNKSQAPNLIKLATNMLCMADMDHTIPM<DVCVSKIRSL |
Parental | F-DIPVDNLYAEPAVLKWIRENISEWRNC |
...IP..NLY...A.LKW....I....NC | |
Retrocopy | L<GIPMNNLYVKQADLKWMKNDIFQ*SNC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 13 .69 RPM |
SRP021940_cerebellum | 0 .00 RPM | 64 .03 RPM |
SRP021940_embryo | 0 .00 RPM | 33 .99 RPM |
SRP021940_placental_villous | 0 .00 RPM | 13 .57 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 19 .99 RPM |
SRP021940_testis | 0 .00 RPM | 17 .20 RPM |