RetrogeneDB ID:

retro_mmur_90

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_1189:415041..415832(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRPS1
Ensembl ID:ENSMICG00000001929
Aliases:None
Description:phosphoribosyl pyrophosphate synthetase 1 [Source:HGNC Symbol;Acc:9462]


Retrocopy-Parental alignment summary:






>retro_mmur_90
ATGCTGAATACTAAAATCGTCAGCGGCAGCTCCCACCAGGATTTGTCCCAGAAGATTACTGACTGCCTCAGCCTGGAGCT
GGGCGAGGTAGTGACTGAGAAATTCAGCAACCAGGAGACCTGTGTGGAAATTTTATATGGAGAGGATGTCTACATTGTTC
AGAGTGGTTGTGGTGAAATCAATGACAATTTAATGGAGCTTTTGATCATGATTAATGCCTGCAAGATTGTTCAGCCAGCC
GGGTCACTGCAGTCTTCCCATGCTTCCTGTATGCCAGGCAGATTAGGAAGGATAAGGGCTGGGCTCCAATTTCAGCCAAA
CTTGTTGCAAATAAGCTGTCTGTAGCAGTTGCAGATCATATTATCGCCATGGACCTGCATGCTTCTCAAATGCAGGGCTT
TTTTGATATCCGGTCGACAATGTGTATGCAGAGGCAGCTGTCCTGGAGTGGATAAGGGAGAACCTCTCTGAGTGGAGGAA
CTGCACTGTTGTCTCGCCGGATGCTGGTGGAGCTAAGAGAGTAACCTCCGCTGCCGACCGGCTGAATGTAGACTTTGCCT
TGATTCACAAAGAACGGAAGAAGGCCAGTGAAGTGGACCGCATGGTGCTAGTGGGAAATGTGAAGGATCGAGTGGCCGTC
CTTGTTGATGACATTGCTGATGCTTGTGGCACAATCTGCCATGCAGCTGACAAACGTCTCTCAGCTGGAGCCACCACAGT
TTATGCTATCTTGACTCATGGAATCTTTGCTGGTCCAGCCATTTCTCGCATCAAACAACGCATGCTTGAAG

ORF - retro_mmur_90 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.96 %
Parental protein coverage: 83.96 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL
M.N.KI.SGSSHQDLSQKI.D.L.LELG.VVT.KFSNQETCVEI.....GEDVYIVQSGCGEINDNLMEL
RetrocopyMLNTKIVSGSSHQDLSQKITDCLSLELGEVVTEKFSNQETCVEI---LYGEDVYIVQSGCGEINDNLMEL
ParentalLIMINACKIA-SASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQXXXD
LIMINACKI..SASRVTAV.PCF.YARQ..KDK..APISAKLVAN.LSVA.ADHII.MDLHASQ.Q...D
RetrocopyLIMINACKIV<SASRVTAVFPCFLYARQIRKDKGWAPISAKLVANKLSVAVADHIIAMDLHASQMQGFFD
ParentalI-PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLV
I.PVDN.YAE.AVL.WIREN.SEWRNCT.VSPDAGGAKRVTS.ADRLNVDFALIHKERKKA.EVDRMVLV
RetrocopyI<PVDNVYAEAAVLEWIRENLSEWRNCTVVSPDAGGAKRVTSAADRLNVDFALIHKERKKASEVDRMVLV
ParentalGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRI-NNACFE
G.VKDRVA.LVDD.AD.CGTICHAADK.LSAGAT.VYAILTHGIF.GPAISRI.NNAC..
RetrocopyGNVKDRVAVLVDDIADACGTICHAADKRLSAGATTVYAILTHGIFAGPAISRI>NNACLK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_90 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_90 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 46 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000027841 retrocopy
Bos taurus ENSBTAG000000197033 retrocopies
Canis familiaris ENSCAFG000000179761 retrocopy
Equus caballus ENSECAG000000247112 retrocopies
Felis catus ENSFCAG000000122861 retrocopy
Homo sapiens ENSG000001472241 retrocopy
Gorilla gorilla ENSGGOG000000124181 retrocopy
Macropus eugenii ENSMEUG000000100712 retrocopies
Microcebus murinus ENSMICG00000001929 5 retrocopies
Myotis lucifugus ENSMLUG000000154982 retrocopies
Macaca mulatta ENSMMUG000000046743 retrocopies
Mustela putorius furoENSMPUG000000037932 retrocopies
Mus musculus ENSMUSG000000314322 retrocopies
Nomascus leucogenys ENSNLEG000000139112 retrocopies
Oryctolagus cuniculus ENSOCUG000000123913 retrocopies
Ochotona princeps ENSOPRG000000131401 retrocopy
Pongo abelii ENSPPYG000000206122 retrocopies
Pan troglodytes ENSPTRG000000221632 retrocopies
Rattus norvegicus ENSRNOG000000251662 retrocopies
Sus scrofa ENSSSCG000000125601 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000076382 retrocopies
Tarsius syrichta ENSTSYG000000135562 retrocopies
Tursiops truncatus ENSTTRG000000038352 retrocopies
Vicugna pacos ENSVPAG000000002551 retrocopy



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