RetrogeneDB ID: | retro_rnor_341 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:64038845..64039802(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000032513 | |
Aliases: | Prps1l1, Prps3 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Prps1 | ||
Ensembl ID: | ENSRNOG00000025166 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P60892] |
Percent Identity: | 95.28 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
MPNIKIFSGSSHQDLSQKI..RLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEIND.LMEL | |
Retrocopy | MPNIKIFSGSSHQDLSQKITERLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDSLMEL |
Parental | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAP.SAKL.ANMLS.AGADHIITMDLHASQIQGFFDI | |
Retrocopy | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPMSAKLIANMLSIAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
PVDNLYAEPAVLKWI.ENIS.WRNCTIVSPDAGGAKRVTSIAD.LNVDFALIHKERKKANEVDRMVLVGD | |
Retrocopy | PVDNLYAEPAVLKWIKENISDWRNCTIVSPDAGGAKRVTSIADHLNVDFALIHKERKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK |
VK.RVAILVDDMADTCGTIC.AADKLLS.GATRVYAILTHGIFSGPAI.RIN.ACFEAVVVTNTIPQEDK | |
Retrocopy | VKERVAILVDDMADTCGTICYAADKLLSEGATRVYAILTHGIFSGPAIARINGACFEAVVVTNTIPQEDK |
Parental | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
MK.CSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL | |
Retrocopy | MKQCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 62 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .77 RPM |
SRP017611_liver | 0 .00 RPM | 7 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_157 |