RetrogeneDB ID: | retro_btau_157 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:26540422..26541412(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000033954 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSBTAG00000019703 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ58] |
Percent Identity: | 91.17 % |
Parental protein coverage: | 99.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELL |
PNIKIFSGSSHQDLSQKIADRLGLELGKVVTKK.SNQETCVEIGESV.GEDVYIVQSGCGEINDNLMELL | |
Retrocopy | PNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKLSNQETCVEIGESVQGEDVYIVQSGCGEINDNLMELL |
Parental | IMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIP |
IMINACKIASA.RVTAVIPCFPYARQDK...SRAPISAKLVA.MLS.AGADHIITMDLHASQIQGFFDIP | |
Retrocopy | IMINACKIASAGRVTAVIPCFPYARQDKRGESRAPISAKLVADMLSTAGADHIITMDLHASQIQGFFDIP |
Parental | VDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDV |
VDNL.AEPAVLKWI.E.IS.WR.CTIVSPDAG..KR.TSIADRLNVDFALIHK.RKKA.EVD.MVLVGDV | |
Retrocopy | VDNLCAEPAVLKWIKEQISDWRSCTIVSPDAGEVKRATSIADRLNVDFALIHKVRKKAGEVDGMVLVGDV |
Parental | KDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKM |
K.RVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA..RIN.A.FEAVVVTNT.PQEDKM | |
Retrocopy | KYRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAVTRINSAGFEAVVVTNTVPQEDKM |
Parental | KHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
KHCSKIQVIDISMILAEAIRR.H.G.SVSYLFSHVPL | |
Retrocopy | KHCSKIQVIDISMILAEAIRRIHSGKSVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .91 RPM |
ERP005899_muscle | 0 .00 RPM | 17 .74 RPM |
SRP017611_brain | 0 .00 RPM | 15 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .44 RPM |
SRP017611_liver | 0 .00 RPM | 5 .44 RPM |
SRP030211_testis | 30 .09 RPM | 27 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_341 |