RetrogeneDB ID: | retro_ocun_867 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:37415453..37416085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000012391 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase [Source:UniProtKB/TrEMBL;Acc:G1T373] |
Percent Identity: | 80.09 % |
Parental protein coverage: | 66.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIKENISEWRNCTI-VSPD |
S.APISA.LVANMLSVAGA.H.ITM.LHASQ.QGFFDI.VD.LYAEPAVLK.IKE.I.EWRNCT..VSP. | |
Retrocopy | SWAPISAMLVANMLSVAGANHVITMNLHASQSQGFFDILVDRLYAEPAVLKGIKESIPEWRNCTT<VSPG |
Parental | AGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKDR-VAILVDDMADTCGTICHAADKLLSAG |
AG.A.RV.SI.D.LNVDFAL.HKE.KKA.EVDRMV...D..DR.VAILVDD.ADTCGTICHAADKLLSAG | |
Retrocopy | AGRANRVASITDQLNVDFALVHKEWKKAHEVDRMVPAEDGNDR<VAILVDDTADTCGTICHAADKLLSAG |
Parental | ATRVYAILTHGIFSGPAIS-RINNACFEAVVVTNTIPQEDKMKHCSKIQ-VIDISMILAEAIRRTHNGES |
ATRVYA.LTH.IF.GPAIS..IN.ACF.AVVVT.TIPQEDKMKHCSKIQ.VIDIS.ILA.AIRRT.NG.S | |
Retrocopy | ATRVYAVLTHRIFPGPAIS<SINKACFKAVVVTSTIPQEDKMKHCSKIQ<VIDISLILAGAIRRTRNGDS |
Parental | VSYLFS |
.SYLFS | |
Retrocopy | ASYLFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .12 RPM |
SRP017611_liver | 0 .00 RPM | 9 .79 RPM |