RetrogeneDB ID: | retro_ocun_912 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:44392764..44393243(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021780 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000012391 | ||
Aliases: | None | ||
Description: | Ribose-phosphate pyrophosphokinase [Source:UniProtKB/TrEMBL;Acc:G1T373] |
Percent Identity: | 79.04 % |
Parental protein coverage: | 51.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
M.N.KIFSGSSHQDLSQK.ADRLGLELGKVVT.KFSN..TCVE.G.SV.GEDVY.VQSGC.EI.DNLMEL | |
Retrocopy | MSNVKIFSGSSHQDLSQKTADRLGLELGKVVTNKFSNHKTCVETGGSVHGEDVYVVQSGCAEIKDNLMEL |
Parental | LIMINACKIASASR-VTAVIPCFPYARQDKKDKVGESRAPISAKL-VANMLSVAGADHIITMDLHASQIQ |
..MINACKIASAS..VTAVI.CFPYA.QDK......S.APISAKL.VANMLSV.....IITMDLHASQI. | |
Retrocopy | PVMINACKIASASQ<VTAVILCFPYALQDKDE----SWAPISAKL<VANMLSVTSVNPIITMDLHASQIE |
Parental | G-FFDIPVDNLYAEPAVLKWIKENISE |
G.FFDIPVDNLY.EPAVLKWIKENI.E | |
Retrocopy | G>FFDIPVDNLYFEPAVLKWIKENITE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .12 RPM |
SRP017611_liver | 0 .00 RPM | 9 .79 RPM |