RetrogeneDB ID: | retro_pabe_46 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:66604625..66605579(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000017756 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRPS1 | ||
Ensembl ID: | ENSPPYG00000020612 | ||
Aliases: | None | ||
Description: | ribose-phosphate pyrophosphokinase 1 [Source:RefSeq peptide;Acc:NP_001124627] |
Percent Identity: | 92.43 % |
Parental protein coverage: | 99.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NIKIFSGSSHPGFISEKLLTRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELL |
NIKIFSGSSH....S.K...RLGLELGKVVTKKFSNQETCVEI.ESVRGEDVYIVQSGCGEIND.L.ELL | |
Retrocopy | NIKIFSGSSHQD-LSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEINDSLVELL |
Parental | IMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIP |
IMINACKIASASRV.AVIPCFPYARQDKK.KSRAPISAKLVANMLS.AGADHIITMDLHASQIQGFFDIP | |
Retrocopy | IMINACKIASASRVIAVIPCFPYARQDKKGKSRAPISAKLVANMLSIAGADHIITMDLHASQIQGFFDIP |
Parental | VDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDV |
VDNLYAEP.VLKWIRENISEW.NCTIVSPDAGGAKRVTSIAD.LNVDFALIHKERKKANEVD.MVLVGDV | |
Retrocopy | VDNLYAEPTVLKWIRENISEWKNCTIVSPDAGGAKRVTSIADQLNVDFALIHKERKKANEVDCMVLVGDV |
Parental | KDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKM |
.DRVAILVDDMADTCGTIC.AA.KLLSAGATRVYAILTHGIFSGPAISRIN.ACFEAVVVTNTIPQ.DKM | |
Retrocopy | NDRVAILVDDMADTCGTICLAAEKLLSAGATRVYAILTHGIFSGPAISRINTACFEAVVVTNTIPQDDKM |
Parental | KHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
KHCSKI.VIDISMILAEAIRRTHNGESVSYLFSHVPL | |
Retrocopy | KHCSKIRVIDISMILAEAIRRTHNGESVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 62 .59 RPM |
SRP007412_cerebellum | 0 .24 RPM | 49 .86 RPM |
SRP007412_heart | 0 .09 RPM | 15 .20 RPM |
SRP007412_kidney | 0 .13 RPM | 25 .92 RPM |
SRP007412_liver | 0 .18 RPM | 19 .68 RPM |