RetrogeneDB ID: | retro_itri_173 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393356.1:4332781..4333738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025053 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000007638 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMEL |
MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEIND.LMEL | |
Retrocopy | MPNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDSLMEL |
Parental | LIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDI |
LIMINACKIASA.RVTAVIPCFPYARQDKKDKSRAPISAKLVANMLS.AGADHIITMDLHASQIQGFFDI | |
Retrocopy | LIMINACKIASADRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSIAGADHIITMDLHASQIQGFFDI |
Parental | PVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGD |
PVDNLYAEPAVLKWIRENISEW..CTIVSPDAGGAKRVTSIAD.LNVDFALIHKERKKANEVDRMVLVGD | |
Retrocopy | PVDNLYAEPAVLKWIRENISEWKDCTIVSPDAGGAKRVTSIADHLNVDFALIHKERKKANEVDRMVLVGD |
Parental | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDK |
VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAI.RIN.ACFEAVVVTNTIPQEDK | |
Retrocopy | VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAIVRINGACFEAVVVTNTIPQEDK |
Parental | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL | |
Retrocopy | MKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |