RetrogeneDB ID: | retro_chof_820 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_151887:148..463(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP4S1 | ||
Ensembl ID: | ENSCHOG00000013301 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 68.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MIKFFLMVNKQGQTRLSKYYEHMEIYKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQYAALFIVVG |
MIKFFLM.NKQGQTRLSKYYEHMEI.K..LLETEVIK.CLSRSSEQCSFIEYKDF.LIYRQYAALF.VV. | |
Retrocopy | MIKFFLMANKQGQTRLSKYYEHMEINKWILLETEVIKNCLSRSSEQCSFIEYKDFELIYRQYAALFVVVA |
Parental | VNDTENEMAIYEFIHNFVEVLDEYFSRVSELDVSF |
VNDTENEMAIYEFIHN.VEVLDEY.S.VSE.D..F | |
Retrocopy | VNDTENEMAIYEFIHNIVEVLDEYCS*VSEWDIMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011939 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013301 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000009468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013009 | 1 retrocopy | |
Homo sapiens | ENSG00000100478 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003198 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003123 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017579 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015901 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000014031 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005723 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006239 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017161 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy |