RetrogeneDB ID: | retro_pvam_1455 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_91108:40..318(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP4S1 | ||
Ensembl ID: | ENSPVAG00000017161 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 4, sigma 1 subunit [Source:HGNC Symbol;Acc:575] |
Percent Identity: | 51.58 % |
Parental protein coverage: | 58.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EVIKSCLSRSNEQCSFIEYKDFKLVYRQYA-ALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELD |
.V.KS.L..SN...SF.E..DFKL..R.YA.A.F.V.GV.DTENEM.IYEF.HN...V.D..FS.VSEL. | |
Retrocopy | KVMKSNLP*SNDRRSFTECRDFKLMCRKYA>APFTVAGVDDTENEMVIYEFVHNSCQVVDNNFSQVSELN |
Parental | -VSFNAVSQVFRSTWQTQASLDQEP |
.V....V...F...W...A.L.Q.P | |
Retrocopy | >VNLGKV-HIFWMRWCYMAALWQRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013301 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000009468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013009 | 1 retrocopy | |
Homo sapiens | ENSG00000100478 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003198 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003123 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017579 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015901 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000014031 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005723 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006239 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017161 | 1 retrocopy |
retro_pvam_1455 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy |