RetrogeneDB ID: | retro_nleu_788 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397273.1:23446497..23446813(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP4S1 | ||
Ensembl ID: | ENSNLEG00000015901 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.57 % |
Parental protein coverage: | 66.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLS-RSNEQCSFIEYKDFKLIYRQYAALFIVV |
MIKFFLMVNKQGQTRL.KYYE.VDINKRTLLETEVIKSCLS.RSNEQ.SFIEYKDFKLI.RQYAALFIVV | |
Retrocopy | MIKFFLMVNKQGQTRLFKYYEYVDINKRTLLETEVIKSCLS>RSNEQHSFIEYKDFKLIDRQYAALFIVV |
Parental | GVNDAENEMAIYEFIHNFVEVLDEYFSRVSELDVSF |
GVND.EN.MAIYEFIHNFVEVLDEYFS.VSELD..F | |
Retrocopy | GVNDTENKMAIYEFIHNFVEVLDEYFS*VSELDIMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013301 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000009468 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013009 | 1 retrocopy | |
Homo sapiens | ENSG00000100478 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003198 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017579 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015901 | 1 retrocopy |
retro_nleu_788 ,
|
Ornithorhynchus anatinus | ENSOANG00000014031 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005723 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006239 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017161 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010759 | 1 retrocopy |