Parental gene:

RPS20, ENSCJAG00000016631

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:8986781..8993668(-)


>ENSCJAG00000016631
ATGGCTTTTAAGGATACCGGAAAAACACCCGTGGAGCCGGAGGTGGCAATTCACCGAATTCGAATCACTCTCACAAGCCG
CAACGTCAAGTCGCTGGAGAAGGTGTGTGCTGACTTGATCAGAGGAGCAAAGGAAAAGAATCTGAAAGTGAAAGGACCCG
TTCGAATGCCTACGAAGACTTTGAGAATCACTACAAGAAAGACACCTTGTGGTGAAGGTTCTAAAACATGGGATCGTTTC
CAGATGAGAATCCACAAGCGACTCATTGACTTGCACAGTCCTTCTGAGATTGTTAAGCAGATTACTTCCATTAGTATTGA
GCCAGGAGTTGAGTTGATTGAATCTACAGATGCAGAACCCATGGATCCGGAGGGCCAGCAGTACACTTTGAGAAGTGTAT
TTCAATCCCCGGGGACATTTCCTTTTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 281 .07 RPM
SRP051959_skeletal_muscle 91 .79 RPM
SRP051959_lymph_node 250 .83 RPM
SRP051959_lung 150 .69 RPM
SRP051959_liver 144 .76 RPM
SRP051959_kidney 114 .79 RPM
SRP051959_heart 104 .36 RPM
SRP051959_colon 117 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Cavia porcellus ENSCPOG00000011697 possible_ortholog 10 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Loxodonta africana ENSLAFG00000002515 possible_ortholog 8 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2many 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2many 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2many 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_319 98.20 78.17
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2. retro_cjac_667 70.67 52.82
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3. retro_cjac_749 51.06 64.79
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4. retro_cjac_3017 85.33 52.82
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Download FASTA sequences of all ENSCJAG00000016631 retrocopies