Parental gene:

RPS20, ENSSSCG00000006249

Aliases:None
Description:ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]
Organism:Pig (Sus scrofa)
Coordinates:4:82679935..82681181(+)


>ENSSSCG00000006249
ATGGCCTTTAAGGACACCGGCAAGACTCCCGTGGAGCCGGAAGTTGCGATTCACCGGATTCGGATCACCCTCACCAGCCG
CAACGTGAAGTCTTTGGAGAAGGTGTGTGCTGACCTGATCAGAGGCGCGAAGGAGAAGAACCTCAAAGTGAAGGGACCGG
TGCGGATGCCCACCAAGACTCTGAGAATAACTACGAGAAAAACTCCTTGTGGTGAAGGTTCCAAGACTTGGGATCGTTTT
CAGATGAGGATCCACAAGCGACTCATAGACCTGCACAGCCCTTCTGAGATTGTTAAGCAGATCACATCCATCAGTATTGA
ACCAGGAGTCGAGGTTGAAGTCACCATTGCAGATGCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 829 .30 RPM
SRP014902_testis 2300 .91 RPM
SRP018856_adipose 1842 .58 RPM
SRP018288_kidney 678 .60 RPM
SRP018288_lung 714 .72 RPM
SRP018288_liver 338 .05 RPM
SRP018288_heart 515 .12 RPM
SRP035408_liver 275 .36 RPM
SRP035408_brain 481 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Cavia porcellus ENSCPOG00000011697 possible_ortholog 10 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Loxodonta africana ENSLAFG00000002515 possible_ortholog 8 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Oryctolagus cuniculus ENSOCUG00000003068 ortholog_one2one 17 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Ochotona princeps ENSOPRG00000011042 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 ortholog_one2many 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_30 96.46 94.96
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2. retro_sscr_567 75.42 99.16
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3. retro_sscr_575 63.56 97.48
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4. retro_sscr_577 83.19 99.16
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5. retro_sscr_585 75.42 99.16
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6. retro_sscr_611 75.63 99.16
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7. retro_sscr_646 54.64 79.83
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8. retro_sscr_691 74.74 78.15
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9. retro_sscr_708 74.79 100.00
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10. retro_sscr_724 74.75 81.51
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11. retro_sscr_838 63.64 63.03
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12. retro_sscr_1123 73.11 99.16
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Download FASTA sequences of all ENSSSCG00000006249 retrocopies