RetrogeneDB ID: | retro_cpor_298 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:13299494..13300158(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCPOG00000021812 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 76.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | AVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRG-NVGFVFTKEDLTEIRDMLL-ANKVPAAARAGAIAP |
...LMG.NT....AIRGHLE...ALEKLL.H..G.N.GF.F.KE.L.EIRD.L..A.KVPAA...GAIAP | |
Retrocopy | SLLLMGENTVTCRAIRGHLESSLALEKLLHHMGG<NMGFMFIKEALPEIRDVLR<AIKVPAAVCVGAIAP |
Parental | CEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLI-KTGDKVGASEATLLNMLNISPFSFGL |
CEVTV.AQN.GL.PEKTSF.Q.LGIT.KISRGTIEILSD...I..TGD.VGAS.AT.L.MLNISPFSFGL | |
Retrocopy | CEVTVLAQNAGLRPEKTSF-QTLGITMKISRGTIEILSDTHPI<LTGDRVGASKATFLDMLNISPFSFGL |
Parental | IIQQVFDNGSIY-NPEVLDITEETLHSRFLEGVRNV-ASVCLQIGYPTVASVPHSIINGYKRVLALSVET |
IIQ.VFD.G.IY..PEVL......LHSRFLEGV..V.A.VCLQI.YP..AS.P.....G...VL....ET | |
Retrocopy | IIQHVFDSGGIY<HPEVLAL-QRKLHSRFLEGVFDV<AIVCLQISYPKIASRPQWVQMGPGFVL----ET |
Parental | DYTFPLAE-KVKAFLADPSAFAPA |
D.TFP.AE.KVKAFLADPSAF..A | |
Retrocopy | DSTFPPAERKVKAFLADPSAFVAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 149 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 358 .97 RPM |
SRP017611_liver | 0 .00 RPM | 282 .27 RPM |
SRP040447_lung | 0 .00 RPM | 571 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 890 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003756 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000002745 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008677 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000021812 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000007553 | 1 retrocopy | |
Homo sapiens | ENSG00000089157 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000026582 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000016409 | 12 retrocopies | |
Macaca mulatta | ENSMMUG00000009157 | 2 retrocopies | |
Mus musculus | ENSMUSG00000067274 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005749 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003843 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000016429 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000001339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005022 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001148 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001623 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005498 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005658 | 1 retrocopy |