RetrogeneDB ID: | retro_ocun_293 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:84093958..84094547(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000005749 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.89 % |
Parental protein coverage: | 71.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGT |
I.GNVGF.FTKEDLTEIR..L.ANKVP.AA..GA..PC..T..AQNT.LGPE..S.FQALGITTKISRG. | |
Retrocopy | ISGNVGFAFTKEDLTEIRGTL-ANKVPMAADVGATVPCDITEAAQNTVLGPETSSSFQALGITTKISRGI |
Parental | IEILSDVQLIKTGDKV-GASEATLLNMLNIS-PFSFGLIIQQVFDNGSIYNPEVLDITEDTLHSRFLEGV |
IEILS.VQL.K.GD.V.GASE...L..LNIS.PFS.G..IQQVF.N..I.NPEV..ITE.....R...G. | |
Retrocopy | IEILSYVQLLKIGDQV<GASETAELHTLNIS<PFSVGPVIQQVFNNSCIHNPEVRGITEENA-PRLPGGC |
Parental | RNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFVAAAPV |
......CL.IGY.TV.SV.H..IN.YK.V.A.S.E......LA..V.AFL.DP.A..AAA.V | |
Retrocopy | PLRCHCCLRIGYLTVVSVSHPNINEYKQVPAFS-ES*VRLSLALEVTAFLPDPCAALAAAAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 141 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 403 .09 RPM |
SRP017611_liver | 0 .00 RPM | 165 .56 RPM |