RetrogeneDB ID: | retro_cpor_475 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_161:368312..369142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCPOG00000021812 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.89 % |
Parental protein coverage: | 91.97 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGH-L |
MPRE.R.TWK..YFL.IIQLLDD.PKCF.VGADNVGS..MQ.I...L.GK..VLMG......K.I.G... | |
Retrocopy | MPRENRVTWKFSYFLQIIQLLDD*PKCFTVGADNVGSE*MQPISAPLQGKLLVLMGNHSIILKTI*GQ<M |
Parental | ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQ |
ENNPALEKLL.H.....G..F..EDLT.I.D.LLA.KVPAAA.AGAI...EV.VP..NTGL.PEKTS.FQ | |
Retrocopy | ENNPALEKLLLHTQKDMGILFSQEDLTKIKDKLLASKVPAAACAGAIVSHEVPVPPHNTGLEPEKTSLFQ |
Parental | ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLII-QQVFDNGSIYNPEVLDITE |
ALGITTKISRGT.E.LS.V..IKTGDK...S.ATL..ML.ISP.SF.LII.QQVF..GS..NPEVLDITE | |
Retrocopy | ALGITTKISRGTTETLSNVPMIKTGDKIRRSKATLRKMLIISPLSFELII<QQVFNSGSTDNPEVLDITE |
Parental | ETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIING-YK---RVLALSVETDYTFPLAEKV-KAFLADPS |
..L...FL.GV...A.V.LQ..YP...SV...IING.YK...RVLALSVE.DYTFPLAE...KAF.AD.S | |
Retrocopy | QALNCLFLKGVCGAARVYLQTIYPAAVSVSPAIING<YKLYLRVLALSVEHDYTFPLAEVA<KAF*ADAS |
Parental | AF |
.F | |
Retrocopy | TF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 149 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 358 .97 RPM |
SRP017611_liver | 0 .00 RPM | 282 .27 RPM |
SRP040447_lung | 0 .00 RPM | 571 .00 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 890 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003756 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000002745 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008677 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000021812 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000007553 | 1 retrocopy | |
Homo sapiens | ENSG00000089157 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000026582 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000016409 | 12 retrocopies | |
Macaca mulatta | ENSMMUG00000009157 | 2 retrocopies | |
Mus musculus | ENSMUSG00000067274 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005749 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003843 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000016429 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000001339 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005022 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001148 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001623 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000005498 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005658 | 1 retrocopy |